diff --git a/package.json b/package.json
index 11901b5aa..27b8ae808 100644
--- a/package.json
+++ b/package.json
@@ -20,23 +20,23 @@
     "backbone": "1.3.3",
     "body-parser": "^1.19.0",
     "bootstrap": "3.3.7",
-    "chise": "github:iVis-at-Bilkent/chise.js#unstable",
+    "chise": "^2.0.0",
     "chroma-js": "^1.3.4",
-    "cytoscape": "github:iVis-at-Bilkent/cytoscape.js#unstable",
-    "cytoscape-autopan-on-drag": "github:iVis-at-Bilkent/cytoscape.js-autopan-on-drag#unstable",
-    "cytoscape-clipboard": "github:iVis-at-Bilkent/cytoscape.js-clipboard#unstable",
-    "cytoscape-context-menus": "github:iVis-at-Bilkent/cytoscape.js-context-menus#unstable",
-    "cytoscape-edge-editing": "github:iVis-at-Bilkent/cytoscape.js-edge-editing#unstable",
+    "cytoscape": "github:iVis-at-Bilkent/cytoscape.js#master",
+    "cytoscape-autopan-on-drag": "^2.2.0",
+    "cytoscape-clipboard": "^2.2.1",
+    "cytoscape-context-menus": "^3.0.7",
+    "cytoscape-edge-editing": "^2.0.0",
     "cytoscape-edgehandles": "~2.13.1",
-    "cytoscape-expand-collapse": "github:iVis-at-Bilkent/cytoscape.js-expand-collapse#unstable",
-    "cytoscape-fcose": "github:iVis-at-Bilkent/cytoscape.js-fcose#unstable",
-    "cytoscape-grid-guide": "github:iVis-at-Bilkent/cytoscape.js-grid-guide#unstable",
-    "cytoscape-node-resize": "github:iVis-at-Bilkent/cytoscape.js-node-resize#unstable",
+    "cytoscape-expand-collapse": "^3.2.0",
+    "cytoscape-fcose": "^1.1.0",
+    "cytoscape-grid-guide": "^2.3.0",
+    "cytoscape-node-resize": "^3.2.0",
     "cytoscape-panzoom": "~2.5.2",
     "cytoscape-popper": "^1.0.2",
-    "cytoscape-undo-redo": "github:iVis-at-Bilkent/cytoscape.js-undo-redo#unstable",
-    "cytoscape-view-utilities": "github:iVis-at-Bilkent/cytoscape.js-view-utilities#unstable",
-    "cytoscape-layout-utilities": "github:iVis-at-Bilkent/cytoscape.js-layout-utilities#unstable",
+    "cytoscape-undo-redo": "^1.3.2",
+    "cytoscape-view-utilities": "^3.1.0",
+    "cytoscape-layout-utilities": "^1.0.0",
     "filesaverjs": "~0.2.2",
     "intro.js": "2.9.3",
     "jquery": "~3.3.1",
@@ -48,7 +48,7 @@
     "mousetrap": "^1.6.0",
     "multer": "^1.4.2",
     "request": "^2.81.0",
-    "sbgnviz": "github:iVis-at-Bilkent/sbgnviz.js#unstable",
+    "sbgnviz": "^5.0.0",
     "tippy.js": "^3.4.0",
     "underscore": "1.8.3"
   },