Skip to content

Latest commit

 

History

History
116 lines (77 loc) · 4.94 KB

CHANGELOG.md

File metadata and controls

116 lines (77 loc) · 4.94 KB
Raw

v1.0.1

  • Pass kwargs in to Viewconf.widget() so that they can be passed on to the higlass widget and potentially make their way to the higlass component

v0.4.8

  • Bumped higlass version

v0.4.7

  • Bumped pillow version

v0.4.6

  • Added inline_tile support for bed-like items
  • Bumped React version dependency to ensure compatibility with latest Juptyerlab
  • Bumped higlass version to v1.11.8
  • Bumped matplotlib version and added pillow dependency version

v0.4.5

  • Add constructor for multivec tilesets
  • Added wrapper for bam tileset generator
  • Updated docs to include examples for bam and multivec tilesets
  • Add proxy support
  • Add support for listening on a unix socket

v0.4.4

  • Added default positions for non horizontal- tracks
  • Update docs to include Views import in simple example
  • Bump HiGlass to v1.11

v0.4.2

  • Only load FUSE python package when it is called to avoid libfuse missing error

v0.4.1

  • Add missing pixi.js dependency from higlass-jupyter
  • Update @jupyter-widgets/base to support Jupyter Lab v2
  • Update simple-httpfs to fix the missing boto3 error

v0.4.0

  • API for adding genome position search box within python
  • Removed default log file creation. Servers now log to in-memory stream by default.
  • Copied Python docs over from the higlass repo
  • Added save_as_png function
  • Added section on track types and multiple views to the docs
  • Overloaded '+' operator to for combining tracks and creating CombinedTracks
  • Added ViewProjection track
  • Remove the higlass-python.log files that are created everywhere
  • Overloaded the '/' operator to create divided tracks
  • Added support using matplotlib colormaps
  • Created simplified view creation API
  • Add auth_token parameter to higlass.display
  • Use higlass v1.8.1
  • Parameters for turning on the genome position search box

v0.3.0

  • Support multiple overlays and allow to set the uid and type options manually
  • Add support for value locks via the new value_scale_syncs argument of display() and ViewConf
  • Allow not starting FUSE by passing no_fuse=True to display()
  • Update the HiGlass JavaScript library to v1.7

v0.2.1

  • Fixed #30: Example working again
  • Fixed overlay property by making it a property of Views. Also updated HiGlass to v1.6.11 to properly render overlays.

v0.2.0

  • Implement two-way data bindings via traitlets. See notebooks/two-way-data-binding.ipynb for an example
  • Add overlays to display and ViewConf to be able to define overlays
  • Store HiGlass' JavaScript API on the widget's root container. This container can be found via a random ID that is stored in widget.dom_element_id

v0.1.14

  • Add compatibility with JupyterLab v1 and ipywidgets v7.5
  • Bumped HiGlass to v1.6

v0.1.13

  • Added top-level exports of view, display, Tileset, Server, Track, CombinedTrack, View, and ViewConf

v0.1.12

  • Expose dark mode in higlass.display(dark_mode=True)
  • Do not mutate track objects in higlass.display() for reusability
  • Further API cleaning. ViewConf.views is a list of views now

v0.1.11

  • Convenience function for loading 2d labeled points from a dataframe.
  • Remove Flask-related debugging and uninformative logs
  • Add __repr__ to ViewConf for convenience

v0.1.10

  • Synchronized Python and node package versions

v0.1.8

  • Fix installation

v0.1.7

  • Bumped higlass version to v1.5
  • Added CombinedTrack
  • Added change_atributes and change_options functions

v0.1.1

  • First release