conda_env.yml

name: snakepipes_RNA-seq
channels:
- bioconda
- conda-forge
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- adjusttext=1.1.1=pyhd8ed1ab_0
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.4=py311h2582759_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argcomplete=3.0.8=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bat=0.23.0=h0f5d50b_0
- bcrypt=3.2.2=py311hd4cff14_1
- bedtools=2.31.0=hf5e1c6e_2
- binutils_impl_linux-64=2.40=hf600244_0
- bioconductor-annotate=1.80.0=r43hdfd78af_0
- bioconductor-annotationdbi=1.64.1=r43hdfd78af_0
- bioconductor-biobase=2.62.0=r43ha9d7317_1
- bioconductor-biocgenerics=0.48.1=r43hdfd78af_2
- bioconductor-biocparallel=1.36.0=r43hf17093f_1
- bioconductor-biostrings=2.70.1=r43ha9d7317_1
- bioconductor-clusterprofiler=4.10.0=r43hdfd78af_0
- bioconductor-data-packages=20231203=hdfd78af_0
- bioconductor-delayedarray=0.28.0=r43ha9d7317_1
- bioconductor-deseq2=1.42.0=r43hf17093f_0
- bioconductor-dose=3.28.1=r43hdfd78af_0
- bioconductor-enrichplot=1.22.0=r43hdfd78af_0
- bioconductor-fgsea=1.28.0=r43hf17093f_0
- bioconductor-genefilter=1.84.0=r43ha1e849b_0
- bioconductor-geneplotter=1.80.0=r43hdfd78af_0
- bioconductor-genomeinfodb=1.38.1=r43hdfd78af_1
- bioconductor-genomeinfodbdata=1.2.11=r43hdfd78af_1
- bioconductor-genomicranges=1.54.1=r43ha9d7317_1
- bioconductor-ggtree=3.10.0=r43hdfd78af_0
- bioconductor-go.db=3.18.0=r43hdfd78af_0
- bioconductor-gosemsim=2.28.0=r43hf17093f_0
- bioconductor-hdo.db=0.99.1=r43hdfd78af_2
- bioconductor-iranges=2.36.0=r43ha9d7317_1
- bioconductor-keggrest=1.42.0=r43hdfd78af_0
- bioconductor-matrixgenerics=1.14.0=r43hdfd78af_1
- bioconductor-org.mm.eg.db=3.18.0=r43hdfd78af_0
- bioconductor-qvalue=2.34.0=r43hdfd78af_0
- bioconductor-s4arrays=1.2.0=r43ha9d7317_1
- bioconductor-s4vectors=0.40.2=r43ha9d7317_1
- bioconductor-sparsearray=1.2.2=r43ha9d7317_1
- bioconductor-summarizedexperiment=1.32.0=r43hdfd78af_0
- bioconductor-treeio=1.26.0=r43hdfd78af_1
- bioconductor-xvector=0.42.0=r43ha9d7317_1
- bioconductor-zlibbioc=1.48.0=r43ha9d7317_1
- bioinfokit=2.1.3=pyh7cba7a3_0
- boltons=23.0.0=pyhd8ed1ab_0
- boto3=1.26.139=pyhd8ed1ab_0
- botocore=1.29.139=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotlipy=0.7.0=py311hd4cff14_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.5.7=hbcca054_0
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=hbbf8b49_1016
- certifi=2023.5.7=pyhd8ed1ab_0
- cffi=1.15.1=py311h409f033_3
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- comm=0.2.2=pyhd8ed1ab_0
- conda=23.3.1=py311h38be061_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.2.1=py311h9547e67_0
- cryptography=40.0.2=py311h9b4c7bb_0
- curl=8.1.2=h409715c_0
- cycler=0.12.1=pyhd8ed1ab_0
- datrie=0.8.2=py311hd4cff14_6
- debugpy=1.8.1=py311hb755f60_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.20.1=py311h38be061_0
- dpath=2.1.6=pyha770c72_0
- dropbox=11.36.0=pyhd8ed1ab_0
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- exa=0.10.1=habb4d0f_0
- exceptiongroup=1.1.1=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastp=0.23.3=h5f740d0_0
- filechunkio=1.8=py_2
- filelock=3.12.0=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.51.0=py311h459d7ec_0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py311hd4cff14_0
- ftputil=5.0.4=pyhd8ed1ab_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- git=2.40.1=pl5321h86e50cf_0
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.31=pyhd8ed1ab_0
- glib=2.76.3=hfc55251_0
- glib-tools=2.76.3=hfc55251_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=h59595ed_1
- google-api-core=2.11.0=pyhd8ed1ab_0
- google-api-python-client=2.86.0=pyhd8ed1ab_0
- google-auth=2.18.1=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.9.0=pyh1a96a4e_0
- google-crc32c=1.1.2=py311h98db957_4
- google-resumable-media=2.5.0=pyhd8ed1ab_0
- googleapis-common-protos=1.57.1=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- greenlet=2.0.2=py311hb755f60_1
- grpcio=1.55.0=py311ha6695c7_0
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- harfbuzz=7.3.0=hdb3a94d_0
- htop=3.2.2=h8228510_0
- htslib=1.17=h81da01d_2
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=py311h38be061_4
- icu=72.1=hcb278e6_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.6.0=pyha770c72_0
- importlib_metadata=6.6.0=hd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipykernel=6.29.3=pyhd33586a_0
- ipython=8.21.0=pyh707e725_0
- isa-l=2.30.0=ha770c72_4
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- joblib=1.4.0=pyhd8ed1ab_0
- jq=1.5=0
- jsonpatch=1.32=pyhd8ed1ab_0
- jsonpointer=2.0=py_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=8.6.1=pyhd8ed1ab_0
- jupyter_core=5.3.0=py311h38be061_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py311h9547e67_1
- krb5=1.20.1=h81ceb04_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- ldc=1.28.1=hcf88599_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.2=cxx17_h59595ed_2
- libarchive=3.6.2=h039dbb9_1
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=16_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.1.2=h409715c_0
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=13.2.0=h69a702a_0
- libgfortran5=13.2.0=ha4646dd_0
- libglib=2.76.3=hebfc3b9_0
- libgomp=12.2.0=h65d4601_19
- libgrpc=1.55.0=h59456c1_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libllvm12=12.0.1=hf817b99_2
- libmamba=1.4.2=hcea66bb_0
- libmambapy=1.4.2=py311h1f88262_0
- libnghttp2=1.52.0=h61bc06f_0
- libnl=3.7.0=h166bdaf_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libprotobuf=4.23.1=hd1fb520_0
- libsanitizer=12.2.0=h46fd767_19
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=ha587672_6
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.11.5=h0d562d8_0
- libzlib=1.2.13=h166bdaf_4
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- mamba=1.4.2=py311h3072747_0
- markdown-it-py=2.2.0=pyhd8ed1ab_0
- markupsafe=2.1.2=py311h2582759_0
- matplotlib-base=3.8.0=py311h54ef318_1
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- mdurl=0.1.0=pyhd8ed1ab_0
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- multidict=6.0.4=py311h2582759_0
- munkres=1.1.4=pyh9f0ad1d_0
- nbformat=5.8.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- neovim=0.3.1=pyhd8ed1ab_3
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- nlopt=2.7.1=py311he53e775_3
- numpy=1.24.3=py311h64a7726_0
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- openjpeg=2.5.0=hfec8fc6_2
- openpyxl=3.1.2=py311h459d7ec_1
- openssl=3.1.0=hd590300_3
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.1=py311h320fe9a_1
- pandoc=2.19.2=h32600fe_2
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