From 3a8e9c237d39d9c8c2e56b7d339e986ed00d9d9e Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 7 Nov 2024 14:12:08 -0800 Subject: [PATCH] Numpy 2.0 gallery (#214) * Create gallery.yaml * Update requirements.txt * Update requirements.txt * Delete .github/workflows/gallery.yaml * Update requirements.txt * Update pyproject.toml * Update pyproject.toml * Update requirements.txt * Update requirements-dev.txt * Update requirements-doc.txt * Update requirements-doc.txt * Update all requirements except dev * Update rtd config * Update changelog --------- Co-authored-by: Ryan Ly --- .readthedocs.yaml | 4 ++-- CHANGELOG.md | 1 + requirements-dev.txt | 2 +- requirements-opt.txt | 6 +++--- requirements.txt | 12 ++++++------ 5 files changed, 13 insertions(+), 12 deletions(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index f57db3ed..8d6ffb00 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -6,9 +6,9 @@ version: 2 build: - os: ubuntu-20.04 + os: ubuntu-22.04 tools: - python: '3.9' + python: '3.12' # Build documentation in the docs/ directory with Sphinx sphinx: diff --git a/CHANGELOG.md b/CHANGELOG.md index 78b5742d..ecf61732 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,7 @@ ## 1.0.0 (Upcoming) ### Enhancements * Added support for Pathlib paths. @mavaylon1 [#212](https://github.com/hdmf-dev/hdmf-zarr/pull/212) +* Updated packages used for testing and readthedocs configuration. @mavaylon1, @rly [#214](https://github.com/hdmf-dev/hdmf-zarr/pull/214) ## 0.9.0 (September 16, 2024) ### Enhancements diff --git a/requirements-dev.txt b/requirements-dev.txt index 0fd19af4..047125eb 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -12,4 +12,4 @@ pytest==7.4.3 pytest-cov==4.1.0 python-dateutil==2.8.2 ruff==0.1.3 -tox==4.11.3 \ No newline at end of file +tox==4.11.3 diff --git a/requirements-opt.txt b/requirements-opt.txt index 771f5d04..6fc3bcb0 100644 --- a/requirements-opt.txt +++ b/requirements-opt.txt @@ -1,3 +1,3 @@ -tqdm==4.66.4 -fsspec==2024.6.0 -s3fs==2024.6.0 +tqdm==4.67.0 +fsspec==2024.10.0 +s3fs==2024.10.0 diff --git a/requirements.txt b/requirements.txt index 338c96f2..840b4815 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ # pinned dependencies to reproduce an entire development environment to use HDMF-ZARR -hdmf==3.14.2 -zarr==2.16.1 -pynwb==2.5.0 -numpy==2.0.0 -numcodecs==0.12.1 -threadpoolctl==3.2.0 +hdmf==3.14.5 +zarr==2.18.3 +pynwb==2.8.2 +numpy==2.1.3 +numcodecs==0.13.1 +threadpoolctl==3.5.0