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Not producing gff or ffn #11

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raw937 opened this issue Oct 18, 2016 · 2 comments
Open

Not producing gff or ffn #11

raw937 opened this issue Oct 18, 2016 · 2 comments

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@raw937
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raw937 commented Oct 18, 2016

FGS+ -s test-contigs.fasta -o test/ -w 1 -t complete -p 24 -m 30000 -e 1 -d 1

-e 1 option should produce the .gff correct? Still not working?
-d 1 option produces an empty .ffn file.
Plus it overwrites the folder so it can't open

@jianshu93
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hello FGS+ group,

I have the same error. Still not solved? -e 1 and -d 1 not working, all empty files

Thanks,

Jianshu

@grace-cagle
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Is there a fix for this? The minimal usage example does not produce the output.out gff format file as expected.

Running
./FGS+ -s example/NC_000913-454.fna -o output -w 0 -t 454_5 -p 16
results in output.fna output.faa (identical contentents) and output (blank)

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