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Sample project titles

Need some inspiration to come up with a genomics and bioinformatics oriented project for Hackseq? Here are the titles of the projects submitted to the NCBI hackathon. Some of them became the projects you see on the NCBI Hackathons Github organization

  • Prediction of immunogenicity from cancer and bacterial peptides
  • Deriving Structural Variants from RNA-seq Data Using GATK
  • Building a pipeline for determining RNA sequence variability in neurons from any species
  • Small molecule docking in solved protein structure space. Effects of network bifurcation.
  • Integration of ClinVar/dbGaP data into protein structure interfaces
  • Genome Wide View of RNA-seq data
  • Statistical Network Analysis of Variants
  • Automated Epitope Analysis from TCR clones
  • Verification of Structural Variant Data with Information from Public Datasets
  • Building a pipeline network analysis and display of SNPs
  • SRA2R -- building a BioConductor module to import data from SRA
  • Looking at RNAseq network pertubations in specific carcinomas
  • Deriving Quaternary Interactions of Clinically Relevant Mutations from Protein Structure
  • Creating an interface for metadata sorting
  • Finding all quaternary structural associations of ClinVar variants
  • Homogenous mapping of 50,101 RNAseq runs to the human genome
  • Building a pipeline for automated upload and comparison of RNAseq expression data; establishing a standard format for this process
  • Enabling easy and rapid RNAseq analysis from public datasets: Building a GUI for the Sequence Read Archive
  • Metadata Normalization for RNAseq Analysis.
  • Automatic Scanning of NGS Datasets for Disease Relevant Variants
  • A Pushbutton Tool for .vcf Filtering
  • Molecular Matching in Myeloma: Combining RNAseq Data with Drug Response Profiles
  • Automated Genome Selection from Complex Phenotypic Data in dbGaP
  • Using SEQR (PSSM BLAST) to Check for Gross (Domain Level) Differences in RNAseq Datasets
  • Push Button Genomics Analysis with BLAST
  • Building an Educational Environment to Teach Genomic Mapping and Ultrafast BLAST
  • Building an Indexing, Distribution and Updating System for Bioinformatics Virtual Machines