From 878fdb30b7db62a9c7308c5facb5ca143cd9da60 Mon Sep 17 00:00:00 2001
From: Emilio Palumbo <emiliopalumbo@gmail.com>
Date: Sat, 21 Sep 2024 13:21:50 +0200
Subject: [PATCH] Fix type for genome size variable in getIndexBases function

---
 modules/mapping/star/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/mapping/star/main.nf b/modules/mapping/star/main.nf
index ae86830..e02ca81 100644
--- a/modules/mapping/star/main.nf
+++ b/modules/mapping/star/main.nf
@@ -3,7 +3,7 @@ params.starVersion = "2.4.0j--h9ee0642_2"
 params.container = "${params.containerRepo}/star:${params.starVersion}"
 
 def getIndexBases(genome) {
-    int size = genome.size()
+    long size = genome.size()
     if ( genome.extension == "gz" ) {
         RandomAccessFile raf = new RandomAccessFile(genome.toString(), "r");
         raf.seek(raf.length() - 4);
@@ -161,4 +161,4 @@ process map {
     }
     // cmd << "${params.mappingSortTool} index ${prefix}_toGenome.bam"
     cmd.join('\n')
-}
\ No newline at end of file
+}