Fix type for genome size variable in getIndexBases function

guigolab · Sep 21, 2024 · 878fdb3 · 878fdb3
1 parent e8b8a20
commit 878fdb3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/mapping/star/main.nf b/modules/mapping/star/main.nf
@@ -3,7 +3,7 @@ params.starVersion = "2.4.0j--h9ee0642_2"
 params.container = "${params.containerRepo}/star:${params.starVersion}"
 
 def getIndexBases(genome) {
-    int size = genome.size()
+    long size = genome.size()
     if ( genome.extension == "gz" ) {
         RandomAccessFile raf = new RandomAccessFile(genome.toString(), "r");
         raf.seek(raf.length() - 4);
@@ -161,4 +161,4 @@ process map {
     }
     // cmd << "${params.mappingSortTool} index ${prefix}_toGenome.bam"
     cmd.join('\n')
-}
+}