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fix column
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emiliorighi committed Oct 11, 2024
1 parent 8316d04 commit ada7f31
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Showing 2 changed files with 4 additions and 4,887 deletions.
7 changes: 4 additions & 3 deletions .github/workflows/map_tables.yml
Original file line number Diff line number Diff line change
@@ -1,8 +1,9 @@
name: Map NCBI and Ensembl files

on:
schedule:
- cron: '0 0 * * 1'
push:
branches: [ "main" ]

workflow_dispatch:

jobs:
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echo "ASSEMBLY_TABLE=assemblies_table.tsv" >> $GITHUB_ENV
#output file header
header="annotation_name\tfull_path\t$(echo $fields | tr ',' '\t')"
header="annotation_name\t$(echo $fields | tr ',' '\t')"\tfull_path
echo "HEADER=$header" >> $GITHUB_ENV
#output file name
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