From 44e3908a0da795a722617699bf2b6df5e027a4e1 Mon Sep 17 00:00:00 2001 From: Emilio Righi Date: Fri, 11 Oct 2024 16:59:43 +0200 Subject: [PATCH] fix --- .github/workflows/map_tables.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/map_tables.yml b/.github/workflows/map_tables.yml index 58aa76a..444fcb4 100644 --- a/.github/workflows/map_tables.yml +++ b/.github/workflows/map_tables.yml @@ -101,7 +101,7 @@ jobs: cat "${{env.NEW_ANNOTATIONS}}" | awk -F'\t' '{print $2}'| - ./datasets summary genome accession --as-json-lines | + ./datasets summary genome accession --inputfile --as-json-lines | ./dataformat tsv genome --fields "${{env.FIELDS}}" > "${{env.ASSEMBLY_TABLE}}" cat "${{env.ASSEMBLY_TABLE}}"