diff --git a/.github/workflows/map_tables.yml b/.github/workflows/map_tables.yml index 58aa76a..444fcb4 100644 --- a/.github/workflows/map_tables.yml +++ b/.github/workflows/map_tables.yml @@ -101,7 +101,7 @@ jobs: cat "${{env.NEW_ANNOTATIONS}}" | awk -F'\t' '{print $2}'| - ./datasets summary genome accession --as-json-lines | + ./datasets summary genome accession --inputfile --as-json-lines | ./dataformat tsv genome --fields "${{env.FIELDS}}" > "${{env.ASSEMBLY_TABLE}}" cat "${{env.ASSEMBLY_TABLE}}"