diff --git a/docker/geneidx/Dockerfile b/docker/geneidx/Dockerfile index 59b0bbe..756ffa3 100644 --- a/docker/geneidx/Dockerfile +++ b/docker/geneidx/Dockerfile @@ -44,8 +44,3 @@ RUN chmod +x /usr/local/bin/FastaToTbl RUN chmod +x /usr/local/bin/sgp_getHSPSR.pl - -ENTRYPOINT [ "/usr/local/bin/blast2gff" ] -ENTRYPOINT [ "/usr/local/bin/FastaToTbl" ] -ENTRYPOINT [ "/usr/local/bin/geneid" ] -ENTRYPOINT [ "/usr/local/bin/sgp_getHSPSR.pl" ] diff --git a/nextflow.config b/nextflow.config index 7569ad6..dd66f34 100644 --- a/nextflow.config +++ b/nextflow.config @@ -13,7 +13,6 @@ includeConfig 'conf/base.config' process { // indicates the default container to be used if not defined within the modules - // container = 'ferriolcalvet/geneid-fetching:latest' container = 'ferriolcalvet/geneidx:latest' // custom container options in case you use docker for mapping the users and avoid docker writing files as root diff --git a/subworkflows/tools.nf b/subworkflows/tools.nf index 2d3b69f..58536c8 100644 --- a/subworkflows/tools.nf +++ b/subworkflows/tools.nf @@ -64,7 +64,7 @@ process fix_chr_names { process Index_i { // indicates to use as a container the value indicated in the parameter - container "ferriolcalvet/geneid-fetching" + container "ferriolcalvet/geneidx" // indicates to use as a label the value indicated in the parameter label (params.LABEL)