DESCRIPTION

Package: GenomAutomorphism
Title: Compute the automorphisms between DNA's Abelian group representations
Version: 1.6.0
Authors@R: 
    person( given = "Robersy",
            family = "Sanchez",
            role = c("aut", "cre"),
            email = "genomicmath@gmail.com",
            comment = c(ORCID = "0000-0002-5246-1453"))
URL: https://github.com/genomaths/GenomAutomorphism
BugReports: https://github.com/genomaths/GenomAutomorphism/issues
Description: 
            This is a R package to compute the automorphisms between pairwise 
            aligned DNA sequences represented as elements from a Genomic 
            Abelian group. In a general scenario, from genomic regions till 
            the whole genomes from a given population (from any species or 
            close related species) can be algebraically represented as a 
            direct sum of cyclic groups or more specifically Abelian p-groups. 
            Basically, we propose the representation of multiple sequence 
            alignments of length N bp as element of a finite Abelian group 
            created by the direct sum of homocyclic Abelian group of 
            prime-power order.
Depends: 
    R (>= 4.4.0),
License: Artistic-2.0
Encoding: UTF-8
biocViews: 
    MathematicalBiology,
    ComparativeGenomics,
    FunctionalGenomics,
    MultipleSequenceAlignment,
    WholeGenome
Imports:
    Biostrings,
    BiocGenerics,
    BiocParallel,
    GenomeInfoDb,
    GenomicRanges,
    IRanges,
    matrixStats,
    XVector,
    dplyr,
    data.table,
    parallel,
    doParallel,
    foreach,
    methods,
    S4Vectors,
    stats,
    numbers,
    utils
RoxygenNote: 7.3.1
Suggests:
    spelling,
    rmarkdown,
    BiocStyle,
    testthat (>= 3.0.0),
    knitr
Roxygen: list(markdown = TRUE)
Language: en-US
LazyData: false
Config/testthat/edition: 3
VignetteBuilder: knitr