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Capture identifiers in culture_collection and/or strain fields #7

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thomasstjerne opened this issue Feb 11, 2021 · 2 comments
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@thomasstjerne
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From email correspondence with Kessy Abarenkov:
Sometimes strain (https://www.ncbi.nlm.nih.gov/nuccore/GQ503643) or culture_collection (https://www.ncbi.nlm.nih.gov/nuccore/EU427289) field is filled, sometimes they are both filled, either containing the same (https://www.ncbi.nlm.nih.gov/nuccore/GU256745) or different identifier (https://www.ncbi.nlm.nih.gov/nuccore/KX950433).

There might be identifiers in these fields that could support clustering

@mike-podolskiy90 mike-podolskiy90 self-assigned this Feb 12, 2021
@thomasstjerne
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How about storing these in materialSampleID?
@ManonGros opinions?

@ManonGros
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I think that could work: strain or culture_collection in materialSampleID.
What about the bio_material field, any idea if we should store it and where? @thomasstjerne

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