From e928145631e01d5915d33b586e7410ed0d1f095b Mon Sep 17 00:00:00 2001 From: dianichj Date: Fri, 29 Nov 2024 18:15:10 +0100 Subject: [PATCH 1/2] Add post about tracking mitochondria and capturing mitoflashes --- ...-mitochondria-and-capturing-mitoflashes.md | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md diff --git a/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md b/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md new file mode 100644 index 00000000000000..31166b343074bc --- /dev/null +++ b/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md @@ -0,0 +1,21 @@ +--- +title: "New Tutorial: Tracking of mitochondria and capturing mitoflashes" +layout: news +tags: +- bioimaging +- mitoflash +- mitochondria +contributions: + authorship: + - dianichj + - kostrykin +cover: "topics/imaging/images/detection-of-mitoflashes/Workflow_mitoflash.png" +coveralt: "Analysis Pipeline for Tracking Mitochonria and Capturing Mitoflashes." +tutorial: topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html +--- + +We are happy to share that a a new imaging tutorial for **Tracking Mitochondria and Capturing Mitoflashes**, is now available in the Galaxy Training Network. + +![Mitoflash Analysis Pipeline]({% link topics/imaging/images/detection-of-mitoflashes/Workflow_mitoflash.png %} "Analysis Pipeline for Tracking Mitochonria and Capturing Mitoflashes. Overview of the workflow for detecting mitoflash using Mitochondrion detection (Step 1), Mitochondrion tracking (Step 2), and Curve fitting to measured intensities (Step 3).") + +This tutorial, Detection of Mitoflashes, provides a step-by-step guide on analyzing mitoflash events in mitochondria using Galaxy. Mitoflashes are transient bursts of reactive oxygen species (ROS) in mitochondria, linked to bioenergetic states and physiological processes like muscle contraction and neuronal development. The tutorial explains how to preprocess imaging data, identify mitoflash events, and quantify key parameters (amplitude, duration, and frequency) using informatic tools in Galaxy. It is designed for researchers studying mitochondrial behavior in health and disease, emphasizing accessibility and reproducibility in imaging analysis. \ No newline at end of file From eca23dae616e4f2dff6877bad4cd6d7ede94b512 Mon Sep 17 00:00:00 2001 From: diana chJ <122611454+dianichj@users.noreply.github.com> Date: Fri, 29 Nov 2024 18:33:16 +0100 Subject: [PATCH 2/2] Update 2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md --- ...1-29-tracking-of-mitochondria-and-capturing-mitoflashes.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md b/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md index 31166b343074bc..db83948cfc0b2e 100644 --- a/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md +++ b/news/_posts/2024-11-29-tracking-of-mitochondria-and-capturing-mitoflashes.md @@ -14,8 +14,8 @@ coveralt: "Analysis Pipeline for Tracking Mitochonria and Capturing Mitoflashes. tutorial: topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html --- -We are happy to share that a a new imaging tutorial for **Tracking Mitochondria and Capturing Mitoflashes**, is now available in the Galaxy Training Network. +We are happy to share that a new imaging tutorial for **Tracking Mitochondria and Capturing Mitoflashes** is now available in the Galaxy Training Network! ![Mitoflash Analysis Pipeline]({% link topics/imaging/images/detection-of-mitoflashes/Workflow_mitoflash.png %} "Analysis Pipeline for Tracking Mitochonria and Capturing Mitoflashes. Overview of the workflow for detecting mitoflash using Mitochondrion detection (Step 1), Mitochondrion tracking (Step 2), and Curve fitting to measured intensities (Step 3).") -This tutorial, Detection of Mitoflashes, provides a step-by-step guide on analyzing mitoflash events in mitochondria using Galaxy. Mitoflashes are transient bursts of reactive oxygen species (ROS) in mitochondria, linked to bioenergetic states and physiological processes like muscle contraction and neuronal development. The tutorial explains how to preprocess imaging data, identify mitoflash events, and quantify key parameters (amplitude, duration, and frequency) using informatic tools in Galaxy. It is designed for researchers studying mitochondrial behavior in health and disease, emphasizing accessibility and reproducibility in imaging analysis. \ No newline at end of file +This tutorial, Tracking of mitochondria and capturing mitoflashes, provides a step-by-step guide on analyzing mitoflash events in mitochondria using Galaxy. Mitoflashes are transient mitochondrial events characterized by bursts of reactive oxygen species (ROS), membrane potential depolarization, and matrix alkalinization. They are linked to bioenergetic states, physiological processes (like muscle contraction and neuronal development), and may serve as markers of mitochondrial health and longevity. Our tutorial explains how to preprocess imaging data, identify mitoflash events, and quantify key parameters (amplitude, duration, and frequency) using informatics tools in Galaxy. It is designed for researchers studying mitochondrial behavior in health and disease.