ope #1271
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python CQA | |
| on: [push, pull_request] | |
| # TODO: separate lint and test jobs; lint first, test "needs" lint | |
| # https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobs | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| env: | |
| SEQREPO_ROOT_DIR: ./tests/data/seqrepo/latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-test-${{ hashFiles('pyproject.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Update pip and setuptools | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| - name: Install dependencies | |
| run: | | |
| pip install -e .[dev,extras] | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| precommit_hooks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hook: | |
| - name: "Check EOF format" | |
| args: "end-of-file-fixer" | |
| - name: "Check trailing whitespace" | |
| args: "trailing-whitespace" | |
| - name: "Check line ending format" | |
| args: "mixed-line-ending" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-precommit-${{ hashFiles('pyproject.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - name: Update pip and setuptools | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| - name: Install dependencies | |
| run: | | |
| pip install -e .[dev] | |
| - name: ${{ matrix.hook.name }} | |
| run: pre-commit run ${{ matrix.hook.args }} --all-files |