v0.2.10b

• Corrected parsimony

v0.2.10a

v0.2.10a

v0.2.9

• Added --with-node-symbols to gotree draw command
• Added --with-node-comments option to gotree draw command
• Added parsimony algorithms to gotree acr command

v0.2.8b

• Added option -r, --remove-outgroup to command gotree reroot outgroup. It removes the outgroup from rerooted tree;
• Added command gotree collapse single to remove internal nodes in linear paths (non bifurcating internal nodes).

v0.2.7

• Added possibility to give url as input tree:
  • gotree <command> [options] -i http(s)://<url>: downloads the tree from the given url.
  • gotree <command> [options] -i itol://<ID>: downloads the tree having the given ID from iTOL.
  • gotree <command> [options] -i treebase://<ID>: downloads the tree having the given ID from TreeBase.
• Added option --format <newick|nexus|phyloxml> to specify tree input format (now for all commands, not only reformat)

v0.2.7b

• Take into account translate command in Nexus files (rename taxa)
• Corrected Nexus parser (comments+tax labels)
• Corrected PhyloXML parser (for nil branch lengths and supports)
• Edges can have comments if located after the length )[node comment]:0.001[edge comment]

v0.2.6

• Using dep to manage dependencies

v0.2.5

• Grouped branch lengths subcommands under gotree brlen command (clear, scale, setmin, setrand)
• Grouped branch supports subcommands under gotree support command (clear, scale, setrand)
• Added function to scale branch lengths and supports

v0.2.4

• Added random tip selection option to prune to command;
• Added --auto option to rename command;
• Added command gotree sample to randomly sample trees from a set of input trees (with or without replacement);
• Added command gotre draw cyjs to draw trees using cytoscape js;
• Added -l option to gotree compare distances to include tips;
• Corrected cpu id in support log;
• Added options for computation of individual taxa transfer indexes;

v0.2.3

• Corrected ncbi taxonomy download
• Added clear comments function
• Nexus + PhyloXML parser
• Added merge command to merge 2 unrooted trees
• Added indexes: Colless + Sackin