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Updates to Diff Iso Scoring Algorithm (and more options) #733

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PMSeitzer opened this issue Jun 20, 2024 · 0 comments
Open
4 tasks

Updates to Diff Iso Scoring Algorithm (and more options) #733

PMSeitzer opened this issue Jun 20, 2024 · 0 comments
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@PMSeitzer
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PMSeitzer commented Jun 20, 2024

  • Some isotopes show bad m/z - may be miscalculating m/z boundaries/offsets - verify that this isn't the case (or fix it if it is).
  • If the [M+0] is completely missing in the unlabeled samples, sometimes there is still good signal in the higher isotopes. Might be a way to think about checking for this case (e.g., re-extraction?)
  • To help evaluate various scoring approaches, save all of the diff iso information in a table, so that different statistical tests can be explored for scoring (no need to reimplement them, just use implementations already available in R).
  • If determine, implement a new scoring algorithm (see https://github.com/calico/mass_spec/issues/1363)
@PMSeitzer PMSeitzer self-assigned this Jun 20, 2024
@PMSeitzer PMSeitzer changed the title Updates to Diff Iso Scoring Algorithm, extraction algorithm Updates to Diff Iso Scoring Algorithm (and more options) Jun 20, 2024
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