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DMTCP-2.6.0-GCCcore-9.3.0.eb fails on installation #21893

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carlos-encs opened this issue Nov 21, 2024 · 1 comment
Open
12 of 13 tasks

DMTCP-2.6.0-GCCcore-9.3.0.eb fails on installation #21893

carlos-encs opened this issue Nov 21, 2024 · 1 comment

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@carlos-encs
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Hi

DMTCP-2.6.0-GCCcore-9.3.0.eb --robot

All dependencies installed, but fails on DMTCP-2.6.0-GCCcore-9.3.0.eb

Dry run: printing build status of easyconfigs and dependencies
CFGS=/encs/pkg/EasyBuild/root/easybuild/easyconfigs

  • $CFGS/m/M4/M4-1.4.19.eb (module: Core | M4/1.4.19)
  • $CFGS/b/Bison/Bison-3.8.2.eb (module: Core | Bison/3.8.2)
  • $CFGS/f/flex/flex-2.6.4.eb (module: Core | flex/2.6.4)
  • $CFGS/z/zlib/zlib-1.2.11.eb (module: Core | zlib/1.2.11)
  • $CFGS/b/binutils/binutils-2.34.eb (module: Core | binutils/2.34)
  • $CFGS/g/GCCcore/GCCcore-9.3.0.eb (module: Core | GCCcore/9.3.0)
  • $CFGS/h/help2man/help2man-1.47.12-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | help2man/1.47.12)
  • $CFGS/m/M4/M4-1.4.18-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | M4/1.4.18)
  • $CFGS/z/zlib/zlib-1.2.11-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | zlib/1.2.11)
  • $CFGS/b/Bison/Bison-3.5.3-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | Bison/3.5.3)
  • $CFGS/f/flex/flex-2.6.4-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | flex/2.6.4)
  • $CFGS/b/binutils/binutils-2.34-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | binutils/2.34)
  • $CFGS/d/DMTCP/DMTCP-2.6.0-GCCcore-9.3.0.eb (module: Compiler/GCCcore/9.3.0 | DMTCP/2.6.0)

Error:

g++ -fPIC -O2 -ftree-vectorize -march=x86-64 -mtune=generic -fno-math-errno -shared -Xlinker -znow -Wl,--unresolved-symbols=ignore-all -L/encs/pkg/EasyBuild/root/software/binutils/2.34-GCCcore-9.3.0/lib64 -L/encs/pkg/EasyBuild/root/software/binutils/2.34-GCCcore-9.3.0/lib -L/encs/pkg/EasyBuild/root/software/GCCcore/9.3.0/lib64 -L/encs/pkg/EasyBuild/root/software/GCCcore/9.3.0/lib -o ../lib/dmtcp/libdmtcp_unique-ckpt.so unique-ckpt.o -ldl -lpthread -lm -lpthread
pathvirt/pathvirt.cpp: In function dmtcp::string resolve_symlink(const char*):
pathvirt/pathvirt.cpp:738:20: error: _STAT_VER was not declared in this scope
738 | if (_real_lxstat(_STAT_VER, path, &statBuf) == 0
| ^~~~~~~~~
make[1]: *** [Makefile:959: pathvirt.o] Error 1
make[1]: Leaving directory '/nfs/encs/ArchDep/x86_64.EL9/eb-temp/DMTCP/2.6.0/GCCcore-9.3.0/dmtcp-2.6.0/plugin'
make: *** [Makefile:117: plugin] Error 2

Any suggestions?

Thanks
dmtcp-2-6-0.log

@branfosj
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See the upstream bug report dmtcp/dmtcp#897 and the PR dmtcp/dmtcp#885 for newer glibc.

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