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remove/improve coverage limit of 254 #1

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droeatumn opened this issue Apr 13, 2021 · 0 comments
Open

remove/improve coverage limit of 254 #1

droeatumn opened this issue Apr 13, 2021 · 0 comments

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@droeatumn
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The kmer counting program has a limit of 255. kmers occurring 255 or more are considered off-kir. In general, coverage shouldn't be too high, because then errors can start looking like non-errors. The work around is to down-sample the input data.

This limit should be addressed and removed. Ideally, it would learn the correct min/max counts based on the input.

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