maven.yml

# This workflow will build a Java project with Maven
# For more information see: https://help.github.com/actions/language-and-framework-guides/building-and-testing-java-with-maven

name: Node.js CI with SAM

on: [push, pull_request]
jobs:
  linterWithESLint:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v2
     - name: Use Node.js
       uses: actions/setup-node@v1
       with:
         node-version: 12.x
     - run: npm install
     - run: npm run lint
  testWithSAMCLI:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v2
     - name: Set up Python
       uses: actions/setup-python@v2
       with:
         python-version: 3.8
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         pip install aws-sam-cli
     - name: Test wdl parsing with SAM CLI build and invoke
       working-directory: ./wdl-parsing
       run: | 
         sam build --use-container
         sam local invoke WDLParsingFunction -e events/event.json &> output.txt
         grep "statusCode\": 200" output.txt
     - name: Test Nextflow parsing with SAM CLI build (no invoke)
       working-directory: ./nextflow-parsing
       # SAM build also runs the Java tests
       run: | 
         sam build --use-container
     - name: Build CWL packing with SAM CLI build (no invoke, no test)
       working-directory: ./cwlpack
       run: sam build --use-container
     - name: Test CWL packing with pytest
       working-directory: ./cwlpack
       run: |
         pip install -r tests/requirements.txt --user
         pip install -r cwl_pack_function/requirements.txt --user
         python -m pytest tests/unit -v
         pylint cwl_pack_function
         pylint tests