Mf.pars

######################################################### CBUMIcDNAfqFromMapped_GenicGenomic_noMultGenes
CONDA_ACTIVATE=source $$(conda info --base)/etc/profile.d/conda.sh ; conda activate ; conda activate

######################################################## parameters
pars := count/% index/%

$(pars):     case=$(subst /, ,$@)
$(pars):     tool=$(word  2, $(case))
$(pars):   genome=$(word  3, $(case))
$(pars):  genomeT=$(word  4, $(case))
$(pars):    toolP=$(word  5, $(case))
$(pars):     tech=$(word  6, $(case))
$(pars):    techV=$(word  7, $(case))
$(pars):   sampleName=$(word  8, $(case))
$(pars):  threads=$(word  9, $(case))
$(pars):     runI=$(word 10, $(case))

$(pars):  genomeT1=$(word 1, $(subst _, ,$(genomeT)))
$(pars):  genomeT2=$(word 2, $(subst _, ,$(genomeT)))

$(pars):    refDir=$(dd)/genomes/index/$(tool)/$(genome)/$(genomeT)/
$(pars): sampleDir=$(dd)/samples/$(tech)/$(techV)/$(sampleName)/
$(pars):techOption=$(tech$(tech)v$(techV))

umiLen_2:=10
umiLen_3:=12
count/%: umiLen=$(umiLen_$(techV))