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faersdbstats

Standardize FDA LAERS database and FAERS database drugs, indications, reactions and outcomes to OMOP Common Data Model V5 concepts and generate the unique case report counts and safety signal statistics

Dependencies:

  • Postgres 9.1+ (create table if not exists)
  • Pentaho Spoon (this repo was built w/ 8.4 then 9.2)
  • AWS s3 bucket and credentials

See our github repository's wiki for more information

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Generate safety signal statistics from FDA FAERS data

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  • Shell 92.1%
  • PLpgSQL 6.9%
  • Python 1.0%