update_container_list.yml

name: Update YAML from container CSV

on:
  pull_request_target:
    paths:
      - 'container/containers.csv'

jobs:
  update_csv:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false

    steps:
      - name: Checkout pull request branch
        uses: actions/checkout@v3
        with:
          token: ${{ secrets.CI_TOKEN }}
          fetch-depth: 0
          repository: ${{ github.event.pull_request.head.repo.full_name }}
          ref: ${{ github.event.pull_request.head.ref }}

      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-name: containers
          create-args: numpy pandas pyyaml tabulate
          generate-run-shell: true

      - name: Update YAML files and Markdown table
        shell: micromamba-shell {0}
        run: |
          python3 .github/workflows/export_envs.py
          cat container/readme/README.md > container/README.md
          cat container/readme/containers.md >> container/README.md

      - name: Commit changes to YAML files and Markdown table
        uses: EndBug/add-and-commit@v9
        with:
          push: true
          message: Update YAML files and Markdown table