Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

bad interpreter: No such file or directory #97

Open
RJMullins opened this issue Jun 24, 2021 · 1 comment
Open

bad interpreter: No such file or directory #97

RJMullins opened this issue Jun 24, 2021 · 1 comment

Comments

@RJMullins
Copy link

RJMullins commented Jun 24, 2021

I have fmriprep working cleanly from docker and am loving it, but thought I would take it a step further and check out fmridenoise on my results.

Unfortunately I run into trouble at this step.

Am running mac os x catalina 10.15.7 using pyenv to set python to 3.9.5.

$ fmridenoise --version
/usr/local/Cellar/pyenv/2.0.1/libexec/pyenv-exec: /Users/mullinsr/.pyenv/versions/3.9.5/bin/fmridenoise: /usr/bin/sh: bad interpreter: No such file or directory
/usr/local/Cellar/pyenv/2.0.1/libexec/pyenv-exec: line 48: /Users/mullinsr/.pyenv/versions/3.9.5/bin/fmridenoise: Undefined error: 0

Note that the same error occurs when I run fmridenoise compare on my BIDS directory, or anything else.

Probably something simple I am overlooking and I will be embarrassed when it gets pointed out, but better that than remain stuck.

@keithcdodd
Copy link

Just to add-on something similar, I am also on a mac (Monterey) but am running it through docker. When I run --version
I.e. docker run compneuro-ncu/fmridenoise:0.2.1 --version

I don't get any version output, but instead just get:

/usr/local/lib/python3.8/dist-packages/nilearn-0.8.1-py3.8.egg/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.
  warn("Fetchers from the nilearn.datasets module will be "
/usr/local/lib/python3.8/dist-packages/pybids-0.14.0-py3.8.egg/bids/config.py:39: FutureWarning: Setting 'extension_initial_dot' will be removed in pybids 0.16.
  warnings.warn("Setting 'extension_initial_dot' will be removed in pybids 0.16.",
0+unknown

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants