diff --git a/wes_service/toil_wes.py b/wes_service/toil_wes.py
index 764d35c..8fe62e7 100644
--- a/wes_service/toil_wes.py
+++ b/wes_service/toil_wes.py
@@ -18,7 +18,7 @@ def __init__(self, run_id):
         super(ToilWorkflow, self).__init__()
         self.run_id = run_id
 
-        self.workdir = os.path.join(os.getcwd(), 'runs', self.run_id)
+        self.workdir = os.path.join(os.getcwd(), 'workflows', self.run_id)
         self.outdir = os.path.join(self.workdir, 'outdir')
         if not os.path.exists(self.outdir):
             os.makedirs(self.outdir)