From 067ce276df32d4c09acb6c17695aa70d341ed499 Mon Sep 17 00:00:00 2001 From: Spencer Date: Wed, 11 Oct 2023 21:45:43 -0500 Subject: [PATCH 1/8] First forecast submission --- model-metadata/ISU_NiemiLab-NLH.yml | 29 + .../2023-10-14-ISU_NiemiLab-NLH.csv | 6096 +++++++++++++++++ 2 files changed, 6125 insertions(+) create mode 100644 model-metadata/ISU_NiemiLab-NLH.yml create mode 100644 model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml new file mode 100644 index 00000000..92b1f2f1 --- /dev/null +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -0,0 +1,29 @@ +team_name: "ISU_NiemiLab" +team_abbr: "ISU_NiemiLab" +model_name: "Nonlinear ASG hierarchical model with discrepancy" +model_abbr: "ASG" +model_version: "1.0" +model_contributors: [ + { + "name": "Spencer Wadsworth", + "affiliation": "Iowa State", + "email": "sgw96@iastate.edu" + }, + { + "name": "Jarad Niemi", + "affiliation": "Iowa State", + "email": "niemi@iastate.edu" + } +] +website_url: +license: "cc-by-4.0" +citation: +team_funding: +include_viz: true +include_ensemble: true +include_eval: true +methods: +data_inputs: +methods_long: +ensemble_of_models: false +ensemble_of_hub_models: false diff --git a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv new file mode 100644 index 00000000..c4ed2794 --- /dev/null +++ b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv @@ -0,0 +1,6096 @@ +"reference_date","horizon","target","target_end_date","location","output_type","output_type_id","value" +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile",0.01,0 +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile",0.025,0 +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile",0.05,1.6465875 +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile",0.1,4.428859 +"2023-10-14",-1,"wk inc flu 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hosp","2023-11-04","56","quantile",0.85,2.6867215 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile",0.9,3.369497 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile",0.95,4.452193 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile",0.975,5.6876825 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile",0.99,7.3052552 From 68de70c4a0b9b493a699c3fedde0732d6347695b Mon Sep 17 00:00:00 2001 From: Spencer Date: Wed, 11 Oct 2023 21:58:09 -0500 Subject: [PATCH 2/8] ASDF --- .../2023-10-14-ISU_NiemiLab-NLH.csv | 12715 ++++++++-------- 1 file changed, 6620 insertions(+), 6095 deletions(-) diff --git a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv index c4ed2794..a8f35e36 100644 --- a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv +++ b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv @@ -1,6096 +1,6621 @@ 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hosp","2023-11-04","56","quantile","0.99",7.3052552 From 3a50f90af9a43476589cce2d43f6d0e9fa382c43 Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 08:20:31 -0500 Subject: [PATCH 3/8] Second attempt --- model-metadata/ISU_NiemiLab-NLH.yml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml index 92b1f2f1..1a6c0fb1 100644 --- a/model-metadata/ISU_NiemiLab-NLH.yml +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -1,7 +1,7 @@ team_name: "ISU_NiemiLab" team_abbr: "ISU_NiemiLab" model_name: "Nonlinear ASG hierarchical model with discrepancy" -model_abbr: "ASG" +model_abbr: "NLH" model_version: "1.0" model_contributors: [ { @@ -17,13 +17,13 @@ model_contributors: [ ] website_url: license: "cc-by-4.0" -citation: -team_funding: +citation: "citation" +team_funding: "funding" include_viz: true include_ensemble: true include_eval: true -methods: -data_inputs: -methods_long: +methods: "A nonlinear hierarchical model of ILI data which is then mapped linearly to hospitalizations" +data_inputs: "weekly incident flu hospitalizations from HHS, and weekly ILI data" +methods_long: "nonlinear model" ensemble_of_models: false ensemble_of_hub_models: false From 81cf24ca367fb6fc43dafed5648210823736b653 Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 08:20:53 -0500 Subject: [PATCH 4/8] Second attempt --- .../2023-10-14-ISU_NiemiLab-NLH.csv | 1050 ++++++++--------- 1 file changed, 525 insertions(+), 525 deletions(-) diff --git a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv index a8f35e36..8d82c0e0 100644 --- a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv +++ b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv @@ -1,14 +1,14 @@ "reference_date","horizon","target","target_end_date","location","output_type","output_type_id","value" -"2023-10-14",-1,"wk flu rate change","2023-10-07","01","pmf","large_increase",0.00596153846153846 -"2023-10-14",-1,"wk flu rate change","2023-10-07","01","pmf","stable",0.994038461538462 -"2023-10-14",0,"wk flu rate change","2023-10-14","01","pmf","large_increase",0.0101923076923077 -"2023-10-14",0,"wk flu rate change","2023-10-14","01","pmf","stable",0.989807692307692 -"2023-10-14",1,"wk flu rate change","2023-10-21","01","pmf","large_increase",0.0159615384615385 -"2023-10-14",1,"wk flu rate change","2023-10-21","01","pmf","stable",0.984038461538462 -"2023-10-14",2,"wk flu rate change","2023-10-28","01","pmf","large_increase",0.0278846153846154 -"2023-10-14",2,"wk flu rate change","2023-10-28","01","pmf","stable",0.972115384615385 -"2023-10-14",3,"wk flu rate change","2023-11-04","01","pmf","large_increase",0.0461538461538462 -"2023-10-14",3,"wk flu rate change","2023-11-04","01","pmf","stable",0.953846153846154 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","01","pmf","large_increase",0.00596153846153846 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","01","pmf","stable",0.994038461538462 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","01","pmf","large_increase",0.0101923076923077 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","01","pmf","stable",0.989807692307692 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","01","pmf","large_increase",0.0159615384615385 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","01","pmf","stable",0.984038461538462 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","01","pmf","large_increase",0.0278846153846154 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","01","pmf","stable",0.972115384615385 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","large_increase",0.0461538461538462 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","stable",0.953846153846154 "2023-10-14",-1,"wk inc flu 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change","2023-10-14","51","pmf","large_increase",0.0421153846153846 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","51","pmf","stable",0.957884615384615 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","51","pmf","large_increase",0.0736538461538462 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","51","pmf","stable",0.926346153846154 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","51","pmf","large_increase",0.118846153846154 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","51","pmf","stable",0.881153846153846 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","51","pmf","large_increase",0.176923076923077 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","51","pmf","stable",0.823076923076923 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","51","quantile","0.01",20.842694 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","51","quantile","0.025",25.3188 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","51","quantile","0.05",28.863765 @@ -6122,16 +6122,16 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","51","quantile","0.95",97.184115 "2023-10-14",3,"wk inc flu hosp","2023-11-04","51","quantile","0.975",121.13905 "2023-10-14",3,"wk inc flu hosp","2023-11-04","51","quantile","0.99",163.06841 -"2023-10-14",-1,"wk flu rate change","2023-10-07","53","pmf","large_increase",0.328846153846154 -"2023-10-14",-1,"wk flu rate change","2023-10-07","53","pmf","stable",0.671153846153846 -"2023-10-14",0,"wk flu rate change","2023-10-14","53","pmf","large_increase",0.551923076923077 -"2023-10-14",0,"wk flu rate change","2023-10-14","53","pmf","stable",0.448076923076923 -"2023-10-14",1,"wk flu rate change","2023-10-21","53","pmf","large_increase",0.659807692307692 -"2023-10-14",1,"wk flu rate change","2023-10-21","53","pmf","stable",0.340192307692308 -"2023-10-14",2,"wk flu rate change","2023-10-28","53","pmf","large_increase",0.746923076923077 -"2023-10-14",2,"wk flu rate change","2023-10-28","53","pmf","stable",0.253076923076923 -"2023-10-14",3,"wk flu rate change","2023-11-04","53","pmf","large_increase",0.847884615384615 -"2023-10-14",3,"wk flu rate change","2023-11-04","53","pmf","stable",0.152115384615385 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","53","pmf","large_increase",0.328846153846154 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","53","pmf","stable",0.671153846153846 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","53","pmf","large_increase",0.551923076923077 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","53","pmf","stable",0.448076923076923 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","53","pmf","large_increase",0.659807692307692 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","53","pmf","stable",0.340192307692308 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","53","pmf","large_increase",0.746923076923077 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","53","pmf","stable",0.253076923076923 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","53","pmf","large_increase",0.847884615384615 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","53","pmf","stable",0.152115384615385 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","53","quantile","0.01",22.418981 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","53","quantile","0.025",26.8658625 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","53","quantile","0.05",31.01845 @@ -6247,16 +6247,16 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","53","quantile","0.95",168.43935 "2023-10-14",3,"wk inc flu hosp","2023-11-04","53","quantile","0.975",205.2468 "2023-10-14",3,"wk inc flu hosp","2023-11-04","53","quantile","0.99",287.862690000001 -"2023-10-14",-1,"wk flu rate change","2023-10-07","54","pmf","large_increase",0.00557692307692308 -"2023-10-14",-1,"wk flu rate change","2023-10-07","54","pmf","stable",0.994423076923077 -"2023-10-14",0,"wk flu rate change","2023-10-14","54","pmf","large_increase",0.00692307692307692 -"2023-10-14",0,"wk flu rate change","2023-10-14","54","pmf","stable",0.993076923076923 -"2023-10-14",1,"wk flu rate change","2023-10-21","54","pmf","large_increase",0.00788461538461538 -"2023-10-14",1,"wk flu rate change","2023-10-21","54","pmf","stable",0.992115384615385 -"2023-10-14",2,"wk flu rate change","2023-10-28","54","pmf","large_increase",0.00884615384615385 -"2023-10-14",2,"wk flu rate change","2023-10-28","54","pmf","stable",0.991153846153846 -"2023-10-14",3,"wk flu rate change","2023-11-04","54","pmf","large_increase",0.00711538461538462 -"2023-10-14",3,"wk flu rate change","2023-11-04","54","pmf","stable",0.992884615384615 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","54","pmf","large_increase",0.00557692307692308 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","54","pmf","stable",0.994423076923077 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","54","pmf","large_increase",0.00692307692307692 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","54","pmf","stable",0.993076923076923 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","54","pmf","large_increase",0.00788461538461538 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","54","pmf","stable",0.992115384615385 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","54","pmf","large_increase",0.00884615384615385 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","54","pmf","stable",0.991153846153846 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","54","pmf","large_increase",0.00711538461538462 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","54","pmf","stable",0.992884615384615 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","54","quantile","0.01",-7.7536028 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","54","quantile","0.025",-4.68943125 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","54","quantile","0.05",-2.8426645 @@ -6372,16 +6372,16 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","54","quantile","0.95",12.03146 "2023-10-14",3,"wk inc flu hosp","2023-11-04","54","quantile","0.975",13.8977225 "2023-10-14",3,"wk inc flu hosp","2023-11-04","54","quantile","0.99",15.975698 -"2023-10-14",-1,"wk flu rate change","2023-10-07","55","pmf","large_increase",0.00288461538461538 -"2023-10-14",-1,"wk flu rate change","2023-10-07","55","pmf","stable",0.997115384615385 -"2023-10-14",0,"wk flu rate change","2023-10-14","55","pmf","large_increase",0.00730769230769231 -"2023-10-14",0,"wk flu rate change","2023-10-14","55","pmf","stable",0.992692307692308 -"2023-10-14",1,"wk flu rate change","2023-10-21","55","pmf","large_increase",0.0157692307692308 -"2023-10-14",1,"wk flu rate change","2023-10-21","55","pmf","stable",0.984230769230769 -"2023-10-14",2,"wk flu rate change","2023-10-28","55","pmf","large_increase",0.0328846153846154 -"2023-10-14",2,"wk flu rate change","2023-10-28","55","pmf","stable",0.967115384615385 -"2023-10-14",3,"wk flu rate change","2023-11-04","55","pmf","large_increase",0.0573076923076923 -"2023-10-14",3,"wk flu rate change","2023-11-04","55","pmf","stable",0.942692307692308 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","55","pmf","large_increase",0.00288461538461538 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","55","pmf","stable",0.997115384615385 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","55","pmf","large_increase",0.00730769230769231 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","55","pmf","stable",0.992692307692308 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","55","pmf","large_increase",0.0157692307692308 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","55","pmf","stable",0.984230769230769 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","55","pmf","large_increase",0.0328846153846154 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","55","pmf","stable",0.967115384615385 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","55","pmf","large_increase",0.0573076923076923 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","55","pmf","stable",0.942692307692308 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","55","quantile","0.01",-6.8075836 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","55","quantile","0.025",-4.74475475 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","55","quantile","0.05",-2.682692 @@ -6497,13 +6497,13 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","55","quantile","0.95",19.7939 "2023-10-14",3,"wk inc flu hosp","2023-11-04","55","quantile","0.975",24.5898475 "2023-10-14",3,"wk inc flu hosp","2023-11-04","55","quantile","0.99",33.230827 -"2023-10-14",-1,"wk flu rate change","2023-10-07","56","pmf","stable",1 -"2023-10-14",0,"wk flu rate change","2023-10-14","56","pmf","stable",1 -"2023-10-14",1,"wk flu rate change","2023-10-21","56","pmf","large_increase",0.000192307692307692 -"2023-10-14",1,"wk flu rate change","2023-10-21","56","pmf","stable",0.999807692307692 -"2023-10-14",2,"wk flu rate change","2023-10-28","56","pmf","stable",1 -"2023-10-14",3,"wk flu rate change","2023-11-04","56","pmf","large_increase",0.00173076923076923 -"2023-10-14",3,"wk flu rate change","2023-11-04","56","pmf","stable",0.998269230769231 +"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","56","pmf","stable",1 +"2023-10-14",0,"wk flu hosp rate change","2023-10-14","56","pmf","stable",1 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","56","pmf","large_increase",0.000192307692307692 +"2023-10-14",1,"wk flu hosp rate change","2023-10-21","56","pmf","stable",0.999807692307692 +"2023-10-14",2,"wk flu hosp rate change","2023-10-28","56","pmf","stable",1 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","56","pmf","large_increase",0.00173076923076923 +"2023-10-14",3,"wk flu hosp rate change","2023-11-04","56","pmf","stable",0.998269230769231 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","56","quantile","0.01",-3.1007422 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","56","quantile","0.025",-2.2505145 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","56","quantile","0.05",-1.6765475 From 45be20d2c20c502bd8b622ef44f9bf1e405a0748 Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 08:25:24 -0500 Subject: [PATCH 5/8] Fix .yml --- model-metadata/ISU_NiemiLab-NLH.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml index 1a6c0fb1..de044f26 100644 --- a/model-metadata/ISU_NiemiLab-NLH.yml +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -15,7 +15,7 @@ model_contributors: [ "email": "niemi@iastate.edu" } ] -website_url: +website_url: "none" license: "cc-by-4.0" citation: "citation" team_funding: "funding" From eb1e0729520e05100781527efc17db397d828719 Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 09:07:17 -0500 Subject: [PATCH 6/8] Additional fixes --- model-metadata/ISU_NiemiLab-NLH.yml | 2 +- .../2023-10-14-ISU_NiemiLab-NLH.csv | 1368 ++++++++--------- 2 files changed, 685 insertions(+), 685 deletions(-) diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml index de044f26..a0a9520a 100644 --- a/model-metadata/ISU_NiemiLab-NLH.yml +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -15,7 +15,7 @@ model_contributors: [ "email": "niemi@iastate.edu" } ] -website_url: "none" +website_url: "https://www.jarad.me/" license: "cc-by-4.0" citation: "citation" team_funding: "funding" diff --git a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv index 8d82c0e0..b1227da2 100644 --- a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv +++ b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv @@ -9,8 +9,8 @@ "2023-10-14",2,"wk flu hosp rate change","2023-10-28","01","pmf","stable",0.972115384615385 "2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","large_increase",0.0461538461538462 "2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","stable",0.953846153846154 -"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.01",-4.2536927 -"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.025",-0.880696325000001 +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.01",0 +"2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.025",0 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.05",1.6465875 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.1",4.428859 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.15",6.148557 @@ -32,8 +32,8 @@ "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.95",25.11858 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.975",27.563015 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.99",30.564123 -"2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.01",-3.7709774 -"2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.025",-0.488150225 +"2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.01",0 +"2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.025",0 "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.05",2.036065 "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.1",4.609525 "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.15",6.2982885 @@ -55,8 +55,8 @@ "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.95",25.468715 "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.975",28.31154 "2023-10-14",0,"wk inc flu hosp","2023-10-14","01","quantile","0.99",33.108762 -"2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.01",-3.3864266 -"2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.025",-0.836121575 +"2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.01",0 +"2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.025",0 "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.05",1.8281585 "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.1",4.718131 "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.15",6.6412375 @@ -78,8 +78,8 @@ "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.95",27.21559 "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.975",30.8036475 "2023-10-14",1,"wk inc flu hosp","2023-10-21","01","quantile","0.99",35.4637920000001 -"2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.01",-3.5074517 -"2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.025",-0.302955975 +"2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.01",0 +"2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.025",0 "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.05",2.3871085 "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.1",5.470707 "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.15",7.373715 @@ -101,8 +101,8 @@ "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.95",29.83897 "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.975",34.028725 "2023-10-14",2,"wk inc flu hosp","2023-10-28","01","quantile","0.99",41.400035 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.01",-4.5256428 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.025",-1.0180495 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.01",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.025",0 "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.05",2.0134135 "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.1",5.036505 "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.15",7.083766 @@ -259,7 +259,7 @@ "2023-10-14",2,"wk flu hosp rate change","2023-10-28","04","pmf","stable",0.909230769230769 "2023-10-14",3,"wk flu hosp rate 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flu hosp","2023-10-28","56","quantile","0.95",4.0961465 "2023-10-14",2,"wk inc flu hosp","2023-10-28","56","quantile","0.975",5.070203 "2023-10-14",2,"wk inc flu hosp","2023-10-28","56","quantile","0.99",6.44835550000003 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.01",-4.247492 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.025",-3.1020265 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.05",-2.298766 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.1",-1.494104 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.15",-0.9899178 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.2",-0.6456824 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.25",-0.32531375 -"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.3",-0.0703913999999999 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.01",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.025",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.05",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.1",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.15",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.2",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.25",0 +"2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.3",0 "2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.35",0.15394025 "2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.4",0.3610604 "2023-10-14",3,"wk inc flu hosp","2023-11-04","56","quantile","0.45",0.54528745 From 3b3411322bc956cfecd9eb27c561ca8603bede4d Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 09:18:54 -0500 Subject: [PATCH 7/8] Fix license --- model-metadata/ISU_NiemiLab-NLH.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml index a0a9520a..c2d87442 100644 --- a/model-metadata/ISU_NiemiLab-NLH.yml +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -16,7 +16,7 @@ model_contributors: [ } ] website_url: "https://www.jarad.me/" -license: "cc-by-4.0" +license: "CC-BY-4.0" citation: "citation" team_funding: "funding" include_viz: true From 25344031bd5e4a04165ee719d8b78c3201d18f48 Mon Sep 17 00:00:00 2001 From: Spencer Date: Thu, 12 Oct 2023 11:06:44 -0500 Subject: [PATCH 8/8] Remove pmf --- model-metadata/ISU_NiemiLab-NLH.yml | 2 +- .../2023-10-14-ISU_NiemiLab-NLH.csv | 525 ------------------ 2 files changed, 1 insertion(+), 526 deletions(-) diff --git a/model-metadata/ISU_NiemiLab-NLH.yml b/model-metadata/ISU_NiemiLab-NLH.yml index c2d87442..35e37fde 100644 --- a/model-metadata/ISU_NiemiLab-NLH.yml +++ b/model-metadata/ISU_NiemiLab-NLH.yml @@ -15,7 +15,7 @@ model_contributors: [ "email": "niemi@iastate.edu" } ] -website_url: "https://www.jarad.me/" +website_url: "https://jarad.me/" license: "CC-BY-4.0" citation: "citation" team_funding: "funding" diff --git a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv index b1227da2..fba66d5e 100644 --- a/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv +++ b/model-output/ISU_NiemiLab-NLH/2023-10-14-ISU_NiemiLab-NLH.csv @@ -1,14 +1,4 @@ "reference_date","horizon","target","target_end_date","location","output_type","output_type_id","value" -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","01","pmf","large_increase",0.00596153846153846 -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","01","pmf","stable",0.994038461538462 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","01","pmf","large_increase",0.0101923076923077 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","01","pmf","stable",0.989807692307692 -"2023-10-14",1,"wk flu hosp rate change","2023-10-21","01","pmf","large_increase",0.0159615384615385 -"2023-10-14",1,"wk flu hosp rate change","2023-10-21","01","pmf","stable",0.984038461538462 -"2023-10-14",2,"wk flu hosp rate change","2023-10-28","01","pmf","large_increase",0.0278846153846154 -"2023-10-14",2,"wk flu hosp rate change","2023-10-28","01","pmf","stable",0.972115384615385 -"2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","large_increase",0.0461538461538462 -"2023-10-14",3,"wk flu hosp rate change","2023-11-04","01","pmf","stable",0.953846153846154 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.01",0 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.025",0 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","01","quantile","0.05",1.6465875 @@ -124,16 +114,6 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.95",32.228065 "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.975",37.25609 "2023-10-14",3,"wk inc flu hosp","2023-11-04","01","quantile","0.99",46.198469 -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","02","pmf","large_increase",0.00288461538461538 -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","02","pmf","stable",0.997115384615385 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","02","pmf","large_increase",0.0257692307692308 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","02","pmf","stable",0.974230769230769 -"2023-10-14",1,"wk flu hosp rate change","2023-10-21","02","pmf","large_increase",0.0907692307692308 -"2023-10-14",1,"wk flu hosp rate change","2023-10-21","02","pmf","stable",0.909230769230769 -"2023-10-14",2,"wk flu hosp rate change","2023-10-28","02","pmf","large_increase",0.163461538461538 -"2023-10-14",2,"wk flu hosp rate change","2023-10-28","02","pmf","stable",0.836538461538462 -"2023-10-14",3,"wk flu hosp rate change","2023-11-04","02","pmf","large_increase",0.2425 -"2023-10-14",3,"wk flu hosp rate change","2023-11-04","02","pmf","stable",0.7575 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","02","quantile","0.01",1.4487793 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","02","quantile","0.025",2.46205075 "2023-10-14",-1,"wk inc flu hosp","2023-10-07","02","quantile","0.05",3.2715175 @@ -249,16 +229,6 @@ "2023-10-14",3,"wk inc flu hosp","2023-11-04","02","quantile","0.95",28.127145 "2023-10-14",3,"wk inc flu hosp","2023-11-04","02","quantile","0.975",34.0000275 "2023-10-14",3,"wk inc flu hosp","2023-11-04","02","quantile","0.99",45.335211 -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","04","pmf","large_increase",0.00634615384615385 -"2023-10-14",-1,"wk flu hosp rate change","2023-10-07","04","pmf","stable",0.993653846153846 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","04","pmf","large_increase",0.0259615384615385 -"2023-10-14",0,"wk flu hosp rate change","2023-10-14","04","pmf","stable",0.974038461538462 -"2023-10-14",1,"wk flu hosp rate 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