test-coverage.yaml

on:
  pull_request:
  push:
    branches: [main, master]

name: test-coverage

jobs:
  test-coverage:
    runs-on: ubuntu-latest

    # Required for OIDC access to S3
    permissions:
      id-token: write
      contents: read

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup R
        uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true

      - name: Setup R dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::covr
          needs: coverage

      - name: Prepare PTAXSIM database
        id: prep_ptaxsim_db
        uses: ./.github/actions/prepare-ptaxsim
        with:
          ASSUMED_ROLE: ${{ secrets.AWS_IAM_ROLE_TO_ASSUME_ARN }}

      - name: Set PTAXSIM database path
        run: echo "PTAXSIM_DB_PATH=${{ steps.prep_ptaxsim_db.outputs.PTAXSIM_DB_DIR }}/ptaxsim.db" >> $GITHUB_ENV
        shell: bash

      - name: Test coverage
        run: |
          covr::codecov(
            quiet = FALSE,
            clean = FALSE,
            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
          )
        shell: Rscript {0}

      - name: Show testthat output
        if: always()
        run: |
          ## --------------------------------------------------------------------
          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash

      - name: Upload test results
        if: failure()
        uses: actions/upload-artifact@v3
        with:
          name: coverage-test-failures
          path: ${{ runner.temp }}/package