diff --git a/.github/workflows/deploy.yaml b/.github/workflows/deploy.yaml new file mode 100644 index 00000000..a5d6eb31 --- /dev/null +++ b/.github/workflows/deploy.yaml @@ -0,0 +1,52 @@ +name: deploy + +on: + pull_request: + push: + branches: [main, '*-assessment-year'] + +env: + REGISTRY: ghcr.io + IMAGE_NAME: ${{ github.repository }} + +jobs: + publish-docker-image: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + + - name: Login to GitHub Container Registry + uses: docker/login-action@v3 + with: + registry: ${{ env.REGISTRY }} + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Extract metadata (tags, labels) for Docker + id: meta + uses: docker/metadata-action@v5 + with: + images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} + # Tag the following types of images: + # * On a branch, tag with the branch name (e.g. `master`) + # * On a PR, tag with the PR number (e.g. `pr-12`) + # * On all events, tag with the short git SHA (e.g. `e956384`) + tags: | + type=ref,event=branch + type=ref,event=pr + type=ref,event=tag + + - name: Build and push Docker image + uses: docker/build-push-action@v5 + with: + context: . + push: true + tags: ${{ steps.meta.outputs.tags }} + labels: ${{ steps.meta.outputs.labels }} + cache-from: type=gha + cache-to: type=gha,mode=max + provenance: false diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 00000000..84bd4528 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,40 @@ +FROM rocker/r-ver:4.3.1 + +# Use PPM for binary installs +ENV RENV_CONFIG_REPOS_OVERRIDE "https://packagemanager.posit.co/cran/__linux__/jammy/latest" +ENV RENV_PATHS_LIBRARY renv/library + +# Install system dependencies +RUN apt-get update && apt-get install --no-install-recommends -y \ + libcurl4-openssl-dev libssl-dev libxml2-dev libgit2-dev git \ + libudunits2-dev python3-dev python3-pip libgdal-dev libgeos-dev \ + libproj-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev pandoc + +# Install pipenv for Python dependencies +RUN pip install pipenv + +# Copy pipenv files into the image. The reason this is a separate step from +# the later step that adds files from the working directory is because we want +# to avoid having to reinstall dependencies every time a file in the directory +# changes, as Docker will bust the cache of every layer following a layer that +# needs to change +COPY Pipfile . +COPY Pipfile.lock . + +# Install Python dependencies +RUN pipenv install --system --deploy + +# Copy R bootstrap files into the image +COPY renv.lock . +COPY .Rprofile . +COPY renv/ renv/ + +# Install R dependencies +RUN Rscript -e 'renv::restore()' + +# Copy the directory into the container +ADD ./ model-res-avm/ + +# Copy R dependencies into the app directory +RUN mv renv model-res-avm/renv +WORKDIR model-res-avm/ diff --git a/Pipfile b/Pipfile index fc44c001..adab27a6 100644 --- a/Pipfile +++ b/Pipfile @@ -4,11 +4,7 @@ verify_ssl = true name = "pypi" [packages] -numpy = "*" -pandas = "*" -scipy = "*" -scikit-learn = "*" -dvc = "*" +"dvc[s3]" = "*" [dev-packages] diff --git a/Pipfile.lock b/Pipfile.lock index 57acd27b..62be65af 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "50fd7779d684ff9ce1e939ca3f2a9d0b297bcf87525e125de86058e56ea97b4a" + "sha256": "7e938cdc53ed747f58be3fc36f603ee425a0de2c17342406daafbca67db03cb0" }, "pipfile-spec": 6, "requires": { @@ -16,98 +16,109 @@ ] }, "default": { + "aiobotocore": { + "extras": [ + "boto3" + ], + "hashes": [ + "sha256:506591374cc0aee1bdf0ebe290560424a24af176dfe2ea7057fe1df97c4f0467", + "sha256:aec605df77ce4635a0479b50fd849aa6b640900f7b295021ecca192e1140e551" + ], + "markers": "python_version >= '3.8'", + "version": "==2.7.0" + }, "aiohttp": { "hashes": [ - "sha256:02f9a2c72fc95d59b881cf38a4b2be9381b9527f9d328771e90f72ac76f31ad8", - "sha256:059a91e88f2c00fe40aed9031b3606c3f311414f86a90d696dd982e7aec48142", - "sha256:05a3c31c6d7cd08c149e50dc7aa2568317f5844acd745621983380597f027a18", - "sha256:08c78317e950e0762c2983f4dd58dc5e6c9ff75c8a0efeae299d363d439c8e34", - 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