Add data transformation to new_feature_template #1444
Workflow file for this run
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| # Workflow that builds a Docker image containing the model code, | |
| # pushes it to the GitHub Container Registry, and then optionally uses | |
| # that container image to run the model using an AWS Batch job. | |
| # | |
| # Images are built on every commit to a PR or main branch in order to ensure | |
| # that the build continues to work properly, but Batch jobs are gated behind | |
| # a `deploy` environment that requires manual approval from a | |
| # @ccao-data/core-team member. | |
| name: build-and-run-model | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize, closed] | |
| workflow_dispatch: | |
| inputs: | |
| run_type: | |
| type: choice | |
| description: Run type or purpose | |
| options: | |
| - junk | |
| - rejected | |
| - test | |
| - baseline | |
| - candidate | |
| - final | |
| default: test | |
| required: true | |
| run_note: | |
| type: string | |
| description: Note to include with run | |
| required: true | |
| report_additional_pins: | |
| type: string | |
| description: Create reports for additional PINs | |
| default: '13253180150000 05174150240000' | |
| required: false | |
| upload_enable: | |
| type: boolean | |
| description: Upload results to S3 | |
| default: true | |
| required: true | |
| cv_enable: | |
| type: boolean | |
| description: Run cross-validation | |
| default: false | |
| required: true | |
| comp_enable: | |
| type: boolean | |
| description: Run comparables finding | |
| default: false | |
| required: true | |
| shap_enable: | |
| type: boolean | |
| description: Calculate SHAP values | |
| default: false | |
| required: true | |
| push: | |
| branches: [master] | |
| jobs: | |
| build-and-run-model: | |
| permissions: | |
| # contents:read and id-token:write permissions are needed to interact | |
| # with GitHub's OIDC Token endpoint so that we can authenticate with AWS | |
| contents: read | |
| id-token: write | |
| # While packages:write is usually not required for workflows, it is | |
| # required in order to allow the reusable called workflow to push to | |
| # GitHub Container Registry | |
| packages: write | |
| uses: ccao-data/actions/.github/workflows/build-and-run-batch-job.yaml@main | |
| with: | |
| backend: "ec2" | |
| vcpu: "40" | |
| memory: "158000" | |
| # Maximum pipeline runtime. This is slightly below 6 hours, which | |
| # is the maximum length of any single GitHub Actions job | |
| role-duration-seconds: 21000 | |
| # Disable Batch job status polling since this workflow often takes | |
| # more than 6 hours | |
| poll_for_status: false | |
| # Set these env vars in the container | |
| container_env_vars: | | |
| WORKFLOW_RUN_TYPE=${{ inputs.run_type }} | |
| WORKFLOW_RUN_NOTE=${{ inputs.run_note }} | |
| UPLOAD_ENABLE_OVERRIDE=${{ inputs.upload_enable }} | |
| CV_ENABLE_OVERRIDE=${{ inputs.cv_enable }} | |
| COMP_ENABLE_OVERRIDE=${{ inputs.comp_enable }} | |
| SHAP_ENABLE_OVERRIDE=${{ inputs.shap_enable }} | |
| REPORT_ADDITIONAL_PINS=${{ inputs.report_additional_pins }} | |
| secrets: | |
| AWS_IAM_ROLE_TO_ASSUME_ARN: ${{ secrets.AWS_IAM_ROLE_TO_ASSUME_ARN }} | |
| AWS_ACCOUNT_ID: ${{ secrets.AWS_ACCOUNT_ID }} | |
| # Set these env vars as secrets so they get masked in the GitHub | |
| # Actions logs | |
| CONTAINER_ENV_VARS: | | |
| AWS_SNS_ARN_MODEL_STATUS=${{ secrets.AWS_SNS_ARN_MODEL_STATUS }} |