.gitignore

#### R ####
# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# Data
*.rds
*.h5ad
*.tsv

#### NEXTFLOW ####
.cache/*
.nextflow*
*/work/*

#### SINGULARITY ###
*.sif

#### MISC ####
AdRoit*
deconv_proportions/*
results/*
work/*
data/raw_data/*
logs/*
trace*
*jpeg
*png

.snakemake/
.conda/
.condarc
.keras/
.local/
rctd_res_cluster/*
res_rctd_cluster/
.pybiomart.sqlite
.theano/
github.com/
none.R
res/*