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Error Opening Files on MacOS #37

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cannin opened this issue Oct 13, 2021 · 1 comment
Open

Error Opening Files on MacOS #37

cannin opened this issue Oct 13, 2021 · 1 comment
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@thepritam
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bug Something isn't working

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@cannin
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cannin commented Oct 13, 2021

Cannot open SIF files on MacOS with error below. Perhaps the paths being used are Windows-centric?

�[90m11:10:39.444�[0m �[1;31mERROR�[m �[90m[AWT-EventQueue-0]�[0m Error executing task: Exception setting tunable value.
java.lang.RuntimeException: Exception setting tunable value.
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:53)
	at org.cytoscape.work.internal.sync.SyncTunableMutator.validateAndWriteBack(SyncTunableMutator.java:59)
	at org.cytoscape.work.internal.sync.SyncTaskManager.displayTunables(SyncTaskManager.java:106)
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:78)
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:99)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.utils.CommandExecutor.execute(CommandExecutor.java:32)
	at org.biopax.cytoscape.causalpath.utils.CyNetworkUtils.readCyNetworkFromFile(CyNetworkUtils.java:163)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.writeSIF(SIFImport.java:89)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.<init>(SIFImport.java:49)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.SifUploadAction(LegendPanel.java:464)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.access$000(LegendPanel.java:42)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel$1.actionPerformed(LegendPanel.java:121)
	at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
	at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
	at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
	at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
	at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
	at java.desktop/java.awt.Component.processMouseEvent(Component.java:6632)
	at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
	at java.desktop/java.awt.Component.processEvent(Component.java:6397)
	at java.desktop/java.awt.Container.processEvent(Container.java:2263)
	at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5008)
	at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
	at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
	at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
	at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
	at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
	at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
	at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2772)
	at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
	at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
	at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
	at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
	at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
	at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Caused by: java.lang.NullPointerException
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:49)
	... 46 more
@cannin cannin added the bug Something isn't working label Oct 13, 2021
@cannin
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cannin commented Oct 13, 2021

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karaf.base: /Applications/Cytoscape_v3.8.2/Cytoscape.app/../framework
JAVA_HOME: null
OpenCL was not initialized because it crashed on the previous attempt.
If you think it works now, remove disable-opencl.dummy manually from Cytoscape's configuration directory.
For more information on how to troubleshoot OpenCL, please refer to http://manual.cytoscape.org/en/stable/Cytoscape_and_OpenCL_GPU.html.
CausalPath APP started
path /CPTAC-BRCA/subtypes/LumAB-vs-Basal/causative.sif
SP1	upregulates-expression	VAMP2
ESR1	upregulates-expression	FOXP1
LIMA1	downregulates-expression	CTNNB1
TP53BP1	downregulates-expression	CTNNB1
ESR1	downregulates-expression	CTNNB1
BAG3	downregulates-expression	CTNNB1
TBL1XR1	upregulates-expression	CPT1A
CEBPB	upregulates-expression	ELANE
RXRA	upregulates-expression	CPT1A
TCF7L2	upregulates-expression	IGF2BP1
FZD7	upregulates-expression	CTNNB1
SP1	downregulates-expression	KRT14
SP1	upregulates-expression	BRD7
SP1	upregulates-expression	GFER
SP1	upregulates-expression	KRT19
CEBPB	upregulates-expression	CDKN2B
NFATC3	upregulates-expression	PTGS2
ASNS	upregulates-expression	CTNNB1
FOXA1	upregulates-expression	HSPA1A
RARA	downregulates-expression	ANXA8
IKBKB	downregulates-expression	CD44
SP1	upregulates-expression	SOD1
CTNNB1	downregulates-expression	CCND1
AR	downregulates-expression	PTGS2
ERBB4	upregulates-expression	WWP1
ESR1	upregulates-expression	FOXA1
CEBPB	upregulates-expression	HSP90B1
CTNNB1	upregulates-expression	CAMK4
TBL1X	upregulates-expression	CPT1A
MAPK9	phosphorylates	RXRA
TBL1X	upregulates-expression	HMGCS2
ERBB4	downregulates-expression	S100B
JUND	upregulates-expression	MYB
PGR	downregulates-expression	PTGS2
SOX10	upregulates-expression	MIA
SLC26A2	upregulates-expression	CTNNB1
IKBKB	downregulates-expression	MMP9
RXRA	upregulates-expression	HMGCS2
AES	upregulates-expression	CCND1
ETS1	upregulates-expression	LCK
RXRA	upregulates-expression	CTGF
LAMC2	upregulates-expression	CTNNB1
CTNNB1	upregulates-expression	MMP14
SP1	upregulates-expression	PMVK
SRF	upregulates-expression	MMP14
BTF3	downregulates-expression	RRAS2
ZBTB7A	downregulates-expression	CDKN2A
GATA3	downregulates-expression	CDH3
CTNNB1	upregulates-expression	CYR61
CRABP2	upregulates-expression	RARA
SP1	downregulates-expression	EGFR
CTGF	upregulates-expression	CTNNB1
MAPKAPK2	phosphorylates	KRT18
KRT5	upregulates-expression	CTNNB1
SP1	downregulates-expression	RGN
GLI3	downregulates-expression	HLA-G
MAPK9	phosphorylates	MAPT
NFIX	upregulates-expression	CHI3L1
SP1	upregulates-expression	MAT2B
ESR1	upregulates-expression	SOD1
SP1	upregulates-expression	MAT2A
JUND	upregulates-expression	CCND1
FOXA1	upregulates-expression	NRIP1
LRRFIP1	downregulates-expression	EGFR
SP1	upregulates-expression	UGCG
ESR1	upregulates-expression	CCND1
GATA3	upregulates-expression	ZEB1
ESR1	upregulates-expression	ZEB1
KRT18	upregulates-expression	AR
ESR1	upregulates-expression	KCTD6
ST6GAL1	upregulates-expression	CEBPB
SP1	upregulates-expression	GGPS1
SP1	upregulates-expression	HMGCS2
MYB	upregulates-expression	CASP6
TCF7L2	upregulates-expression	BIRC5
MYB	downregulates-expression	ICAM1
ESR1	upregulates-expression	HSPB1
AR	upregulates-expression	ERBB3
TSG101	downregulates-expression	EGFR
AR	downregulates-expression	CYP7B1
CEBPB	upregulates-expression	TOM1
CEBPB	upregulates-expression	PRTN3
ZBTB7A	downregulates-expression	PFKP
RPS6KB1	phosphorylates	MAPT
RPS6KB1	phosphorylates	CAMKK1
SP1	upregulates-expression	EAPP
SP1	upregulates-expression	RARA
TCF7L2	upregulates-expression	INCENP
RBP1	upregulates-expression	CTNNB1
SP1	downregulates-expression	PTGS2
CTNNB1	upregulates-expression	INCENP
ESR1	upregulates-expression	RARA
ESR1	upregulates-expression	TFF1
RXRA	upregulates-expression	NRIP1
SP1	upregulates-expression	UGDH
SP1	upregulates-expression	SIGIRR
PTGS2	upregulates-expression	CTNNB1
SP1	upregulates-expression	CCND1
SPDEF	upregulates-expression	SQSTM1
MYB	upregulates-expression	KITLG
PGR	upregulates-expression	BCL2
FOXA1	upregulates-expression	TFF1
ESR1	upregulates-expression	GREB1
ETS1	upregulates-expression	FLT1
FLT1	upregulates-expression	ETS1
CTGF	upregulates-expression	TCF7L2
TEAD3	upregulates-expression	CTGF
RXRA	upregulates-expression	PLIN2
TCF7L2	upregulates-expression	STARD7
KDM4B	upregulates-expression	AR
SRF	upregulates-expression	PLG
CREG1	downregulates-expression	HSPA4
ERBB4	upregulates-expression	PGR
PDCD6IP	downregulates-expression	CTNNB1
ESR1	upregulates-expression	KRT19
GATA3	upregulates-expression	MYB
MYB	upregulates-expression	GATA3
RXRA	upregulates-expression	GRHL1
AKAP13	upregulates-expression	CTNNB1
FOXA1	upregulates-expression	SOD1
ZEB1	downregulates-expression	CXADR
SERPIND1	upregulates-expression	CTNNB1
SPDEF	upregulates-expression	AGR2
ESR1	upregulates-expression	NRIP1
CTNNB1	upregulates-expression	TCF7L2
ESR1	upregulates-expression	ABCA3
SERPINB5	upregulates-expression	ETS1
CSNK2A1	phosphorylates	PGR
TSC22D3	upregulates-expression	CCND1
RNF14	upregulates-expression	CCND1
SP1	upregulates-expression	FASN
MYB	upregulates-expression	MAT2A
NFIB	upregulates-expression	C4BPB
QPCT	upregulates-expression	CTNNB1
ESR1	upregulates-expression	BCL2
SRF	upregulates-expression	CYR61
GATA3	downregulates-expression	FOXC1
GATA3	downregulates-expression	FOXC2
ETS1	upregulates-expression	MMP9
NCOR2	upregulates-expression	AR
KLF6	downregulates-expression	CCND1
NFIB	downregulates-expression	CCND1
SOX9	upregulates-expression	MIA
TBL1XR1	upregulates-expression	HMGCS2
SP1	downregulates-expression	CDK6
TBX3	downregulates-expression	CDKN2A
RARA	upregulates-expression	NRIP1
CTNNB1	upregulates-expression	MMP9
DAPK2	upregulates-expression	KLF6
KLF6	upregulates-expression	DAPK2
CTNNB1	upregulates-expression	STARD7
SRF	upregulates-expression	ITGB1
RXRA	upregulates-expression	ITGA6
EPHB3	upregulates-expression	CTNNB1
SP1	downregulates-expression	POR
AR	upregulates-expression	NAT1
PDPK1	phosphorylates	MAPT
SP1	upregulates-expression	MIF
MYB	upregulates-expression	BCL2
CTNNB1	upregulates-expression	IGF2BP1
CD44	upregulates-expression	TCF7L2
ESR1	upregulates-expression	AR
EAPP	downregulates-expression	CDKN2A
SP1	upregulates-expression	AR
AR	downregulates-expression	SERPINB5
PGR	upregulates-expression	ESR1
ESR1	upregulates-expression	PGR
FASN	upregulates-expression	AR
PLAUR	upregulates-expression	CTNNB1
SP1	upregulates-expression	PGR
MSLN	upregulates-expression	CTNNB1
SPDEF	downregulates-expression	PLAUR
FOXA1	upregulates-expression	CCND1
RCN1	upregulates-expression	CTNNB1
CEBPB	upregulates-expression	PTGS2
PTGS2	upregulates-expression	CEBPB
WWTR1	upregulates-expression	CTGF
CD44	upregulates-expression	CTNNB1
CEBPB	downregulates-expression	GFER
SPDEF	downregulates-expression	MMP9
SP1	upregulates-expression	CERS2
OSmac os x
namecausative.sif
java.lang.RuntimeException: Exception setting tunable value.
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:53) ~[92:org.cytoscape.work-impl:3.8.2]
	at org.cytoscape.work.internal.sync.SyncTunableMutator.validateAndWriteBack(SyncTunableMutator.java:59) ~[92:org.cytoscape.work-impl:3.8.2]
	at org.cytoscape.work.internal.sync.SyncTaskManager.displayTunables(SyncTaskManager.java:106) ~[92:org.cytoscape.work-impl:3.8.2]
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:78) [92:org.cytoscape.work-impl:3.8.2]
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:99) [92:org.cytoscape.work-impl:3.8.2]
	at org.biopax.cytoscape.causalpath.ImportandExecutor.utils.CommandExecutor.execute(CommandExecutor.java:32) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.utils.CyNetworkUtils.readCyNetworkFromFile(CyNetworkUtils.java:163) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.writeSIF(SIFImport.java:98) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.<init>(SIFImport.java:51) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.SifUploadAction(LegendPanel.java:465) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.access$000(LegendPanel.java:42) [120:causalpath:1.0.0]
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel$1.actionPerformed(LegendPanel.java:121) [120:causalpath:1.0.0]
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967) [?:?]
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308) [?:?]
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405) [?:?]
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262) [?:?]
	at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279) [?:?]
	at java.awt.Component.processMouseEvent(Component.java:6632) [?:?]
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3342) [?:?]
	at java.awt.Component.processEvent(Component.java:6397) [?:?]
	at java.awt.Container.processEvent(Container.java:2263) [?:?]
	at java.awt.Component.dispatchEventImpl(Component.java:5008) [?:?]
	at java.awt.Container.dispatchEventImpl(Container.java:2321) [?:?]
	at java.awt.Component.dispatchEvent(Component.java:4840) [?:?]
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918) [?:?]
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547) [?:?]
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488) [?:?]
	at java.awt.Container.dispatchEventImpl(Container.java:2307) [?:?]
	at java.awt.Window.dispatchEventImpl(Window.java:2772) [?:?]
	at java.awt.Component.dispatchEvent(Component.java:4840) [?:?]
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772) [?:?]
	at java.awt.EventQueue$4.run(EventQueue.java:721) [?:?]
	at java.awt.EventQueue$4.run(EventQueue.java:715) [?:?]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:?]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) [?:?]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95) [?:?]
	at java.awt.EventQueue$5.run(EventQueue.java:745) [?:?]
	at java.awt.EventQueue$5.run(EventQueue.java:743) [?:?]
	at java.security.AccessController.doPrivileged(Native Method) ~[?:?]
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85) [?:?]
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:742) [?:?]
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203) [?:?]
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) [?:?]
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) [?:?]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?]
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?]
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:90) [?:?]
Caused by: java.lang.NullPointerException
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:49) ~[?:?]
	... 46 more
�[90m18:00:46.970�[0m �[1;31mERROR�[m �[90m[AWT-EventQueue-0]�[0m Error executing task: Exception setting tunable value.
java.lang.RuntimeException: Exception setting tunable value.
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:53)
	at org.cytoscape.work.internal.sync.SyncTunableMutator.validateAndWriteBack(SyncTunableMutator.java:59)
	at org.cytoscape.work.internal.sync.SyncTaskManager.displayTunables(SyncTaskManager.java:106)
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:78)
	at org.cytoscape.work.internal.sync.SyncTaskManager.execute(SyncTaskManager.java:99)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.utils.CommandExecutor.execute(CommandExecutor.java:32)
	at org.biopax.cytoscape.causalpath.utils.CyNetworkUtils.readCyNetworkFromFile(CyNetworkUtils.java:163)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.writeSIF(SIFImport.java:98)
	at org.biopax.cytoscape.causalpath.ImportandExecutor.tasks.SIFImport.<init>(SIFImport.java:51)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.SifUploadAction(LegendPanel.java:465)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel.access$000(LegendPanel.java:42)
	at org.biopax.cytoscape.causalpath.Panel.LegendPanel$1.actionPerformed(LegendPanel.java:121)
	at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
	at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
	at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
	at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
	at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
	at java.desktop/java.awt.Component.processMouseEvent(Component.java:6632)
	at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
	at java.desktop/java.awt.Component.processEvent(Component.java:6397)
	at java.desktop/java.awt.Container.processEvent(Container.java:2263)
	at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5008)
	at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
	at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
	at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
	at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
	at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
	at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
	at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2772)
	at java.desktop/java.awt.Component.dispatchEvent(Component.java:4840)
	at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
	at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
	at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
	at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
	at java.base/java.security.AccessController.doPrivileged(Native Method)
	at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
	at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
	at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
	at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
	at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Caused by: java.lang.NullPointerException
	at org.cytoscape.work.internal.sync.SyncTunableHandler.handle(SyncTunableHandler.java:49)
	... 46 more

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@cannin @thepritam