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Error with Automatically Built JAR #35

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cannin opened this issue Oct 13, 2021 · 0 comments
Open

Error with Automatically Built JAR #35

cannin opened this issue Oct 13, 2021 · 0 comments
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@cannin
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cannin commented Oct 13, 2021

The build that happens with GitHub Actions available here:
https://github.com/cannin/causalpath_cytoscape_app/releases

does not work. Do you know how to fix? This is the error log:

karaf.base: /Applications/Cytoscape_v3.7.1/Cytoscape.app/../framework
JAVA_HOME: null
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
Could not create CL program
Could not create CL program
Could not create CL program
Could not create CL program
org.cytoscape.app.internal.exception.AppStartupException: Bundle start error
	at org.cytoscape.app.internal.manager.BundleApp.start(BundleApp.java:84) ~[?:?]
	at org.cytoscape.app.internal.manager.AppManager.startApps(AppManager.java:406) ~[?:?]
	at org.cytoscape.app.internal.manager.AppManager.initializeApps(AppManager.java:376) ~[?:?]
	at org.cytoscape.app.internal.manager.AppManager.lambda$attemptInitialization$0(AppManager.java:237) ~[?:?]
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [?:?]
	at java.util.concurrent.FutureTask.run(FutureTask.java:266) [?:?]
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) [?:?]
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) [?:?]
	at java.lang.Thread.run(Thread.java:748) [?:?]
Caused by: org.osgi.framework.BundleException: Unable to resolve causalpath-cytoscape-app [112](R 112.0): missing requirement [causalpath-cytoscape-app [112](R 112.0)] osgi.wiring.package; (osgi.wiring.package=org.biopax.cytoscape.causalpath_cytoscape_app) Unresolved requirements: [[causalpath-cytoscape-app [112](R 112.0)] osgi.wiring.package; (osgi.wiring.package=org.biopax.cytoscape.causalpath_cytoscape_app)]
	at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:4149) ~[?:?]
	at org.apache.felix.framework.Felix.startBundle(Felix.java:2119) ~[?:?]
	at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:998) ~[?:?]
	at org.apache.felix.framework.BundleImpl.start(BundleImpl.java:984) ~[?:?]
	at org.cytoscape.app.internal.manager.BundleApp.start(BundleApp.java:82) ~[?:?]
	... 8 more
org.json.JSONException: A JSONArray text must start with '[' at 1 [character 2 line 1]
	at org.json.JSONTokener.syntaxError(JSONTokener.java:433)
	at org.json.JSONArray.<init>(JSONArray.java:105)
	at org.json.JSONArray.<init>(JSONArray.java:143)
	at org.cytoscape.app.internal.net.WebQuerier.getAllApps(WebQuerier.java:329)
	at org.cytoscape.app.internal.net.UpdateManager.lambda$handleEvent$0(UpdateManager.java:141)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
@cannin cannin added the bug Something isn't working label Oct 13, 2021
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