Releases: cancervariants/disease-normalization
Releases · cancervariants/disease-normalization
0.6.0
What's Changed
- cicd: update workflows/templates from template repo by @korikuzma in #196
- fix: update preferred OMIM prefix by @jsstevenson in #198
- feat: add oncologic disease parameter from mondo terms by @jsstevenson in #200
- build: fix test group name by @jsstevenson in #202
- chore: update gitignore by @jsstevenson in #203
- build!: require python >=3.11 by @jsstevenson in #207
- chore: add acceptance criteria to issue templates by @jsstevenson in #206
- cicd: update precommit by @jsstevenson in #205
- style: update ruff configs by @jsstevenson in #204
- cicd: fix hook names by @jsstevenson in #208
Full Changelog: 0.5.0...0.6.0
0.5.0
What's Changed
- build: require >= Python 3.10 by @korikuzma in #191
- style: update ruff to 0.5.0 by @korikuzma in #192
- build!: update ga4gh.vrs version by @korikuzma in #193
- feat!: use setuptools-scm, capture version at package root by @korikuzma in #194
- feat: update pre-commit version + add more hooks by @korikuzma in #195
Full Changelog: 0.4.0.dev4...0.5.0
0.4.0.dev4
What's Changed
- style: update ruff rules by @jsstevenson in #177
- style: update ruff rules by @jsstevenson in #179
- docs: add docs skeleton by @jsstevenson in #178
- docs: clean up README by @jsstevenson in #185
- docs: add RTD config by @jsstevenson in #184
- cicd: test on 3.12 by @jsstevenson in #183
- build: update build metadata by @jsstevenson in #181
- cicd: add priority label requirement by @jsstevenson in #182
- docs: fix readthedocs links by @korikuzma in #187
- feat: add tqdm to track update progress by @jsstevenson in #188
- fix: don't configure logging on library import by @jsstevenson in #189
Full Changelog: 0.4.0.dev3...0.4.0.dev4
0.4.0.dev3
What's Changed
- fix: ensure consistent source meta schema typing by @jsstevenson in #175
Full Changelog: 0.4.0.dev2...0.4.0.dev3
0.4.0.dev2
What's Changed
- feat!: use OBO release for Mondo by @jsstevenson in #171
Full Changelog: 0.4.0.dev1...0.4.0.dev2
0.4.0.dev1
What's Changed
- feat: add get_all_records DB method by @jsstevenson in #160
- build: use pyproject.toml for build configuration by @jsstevenson in #161
- feat!: merge concepts and source dynamodb tables by @jsstevenson in #162
- feat!: remove search result formatting options by @jsstevenson in #164
- chore: remove unused configs by @jsstevenson in #166
- fix: catch ETL module import errors by @jsstevenson in #165
- test: add basic route tests by @jsstevenson in #167
- cicd: use ruff for formatting by @jsstevenson in #168
- feat!: use wags-tails for managing data by @jsstevenson in #163
- style: fix ruff settings by @jsstevenson in #170
- test: suppress noisy boto logs by default by @jsstevenson in #169
Full Changelog: 0.4.0.dev0...0.4.0.dev1
0.4.0.dev0
What's Changed
- fix: resolve the ETL problems of the week by @jsstevenson in #113
- ci: overhaul test data by @jsstevenson in #115
- feat!: support PostgreSQL as optional storage backend by @jsstevenson in #121
- build: remove requirements.txt files by @jsstevenson in #124
- fix: remove therapy refs by @jsstevenson in #128
- feat!: use vrs 2.0-alpha models in /normalize by @korikuzma in #140
- cicd: update style checks and test coverage dependencies by @jsstevenson in #145
- cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #150
- fix!: use better name for CLI source option by @jsstevenson in #153
- feat: optionally define dynamo table names via env variable by @jsstevenson in #152
- test: update test data by @jsstevenson in #151
Full Changelog: v0.3.1...0.4.0.dev0
0.2.21dev0
What's Changed
- feat!: support PostgreSQL as optional storage backend by @jsstevenson in #116
Full Changelog: 0.2.20...0.2.21dev0
0.2.20
What's Changed
- fix: resolve the ETL problems of the week by @jsstevenson in #112
- ci: overhaul test data by @jsstevenson in #114
- build: pin owlready2==0.40 in Pipfile by @korikuzma in #117
Full Changelog: v0.2.19...0.2.20
v0.3.1
What's Changed
- fix: stricter Mondo xref import rules by @jsstevenson in #86
- ci: update style and checks by @jsstevenson in #90
- fix: click echo msg by @korikuzma in #99
- fix: Catch ValueError during MONDO ETL (staging) by @korikuzma in #108
- fix: MONDO latest version retrieval (staging) by @korikuzma in #109
Full Changelog: v0.3.0...v0.3.1