From f54e5c5d4a2b272126ec85c911fdcd3e3d5054f7 Mon Sep 17 00:00:00 2001 From: Keiran Raine Date: Thu, 25 May 2017 14:29:28 +0100 Subject: [PATCH] Bump dockstore-cgpwxs image to 2.0.7 to pick up fix for cgpPindel --- CHANGES.md | 4 ++++ Dockerfile | 4 ++-- Dockstore.cwl | 2 +- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGES.md b/CHANGES.md index fa3951b..a583812 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,3 +1,7 @@ +### 1.0.6 +* Fixes #13 - Parsing of sample name from BAM headers fails is sample at end of line +* Update dockstore-cgpwxs to [2.0.7](https://github.com/cancerit/dockstore-cgpwxs/releases/tag/2.0.7) - Fixes bug in pindel core. + ### 1.0.5 * Improved handling of CPU oversubscription via PCAP-core update in base image * Update cgpCaVEManWrapper to expose extra options (specifically split size) diff --git a/Dockerfile b/Dockerfile index 6e3f244..1c8beea 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,9 +1,9 @@ -FROM quay.io/wtsicgp/dockstore-cgpwxs:2.0.6 +FROM quay.io/wtsicgp/dockstore-cgpwxs:2.0.7 MAINTAINER keiranmraine@gmail.com LABEL uk.ac.sanger.cgp="Cancer Genome Project, Wellcome Trust Sanger Institute" \ - version="1.0.5" \ + version="1.0.6" \ description="The CGP WGS pipeline for dockstore.org" USER root diff --git a/Dockstore.cwl b/Dockstore.cwl index 4170c9c..b59d50e 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -19,7 +19,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/wtsicgp/dockstore-cgpwgs:1.0.5" + dockerPull: "quay.io/wtsicgp/dockstore-cgpwgs:1.0.6" hints: - class: ResourceRequirement