From 89e7677766a1e58c86514d845716bb3334203fd8 Mon Sep 17 00:00:00 2001 From: Keiran Raine Date: Mon, 5 Jun 2017 10:22:37 +0100 Subject: [PATCH] Apply fix for BRASS --- CHANGES.md | 4 ++++ Dockerfile | 2 +- Dockstore.cwl | 2 +- build/opt-build.sh | 2 +- 4 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGES.md b/CHANGES.md index a583812..941cd8f 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,3 +1,7 @@ +### 1.0.7 +* Update [BRASS to v5.4.0](https://github.com/cancerit/BRASS/releases/tag/v5.4.0) + * Specifically fixes a vector merge bug which produces warnings (but no apparent change to results). + ### 1.0.6 * Fixes #13 - Parsing of sample name from BAM headers fails is sample at end of line * Update dockstore-cgpwxs to [2.0.7](https://github.com/cancerit/dockstore-cgpwxs/releases/tag/2.0.7) - Fixes bug in pindel core. diff --git a/Dockerfile b/Dockerfile index 1c8beea..248d2ba 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ FROM quay.io/wtsicgp/dockstore-cgpwxs:2.0.7 MAINTAINER keiranmraine@gmail.com LABEL uk.ac.sanger.cgp="Cancer Genome Project, Wellcome Trust Sanger Institute" \ - version="1.0.6" \ + version="1.0.7" \ description="The CGP WGS pipeline for dockstore.org" USER root diff --git a/Dockstore.cwl b/Dockstore.cwl index b59d50e..f32f7aa 100644 --- a/Dockstore.cwl +++ b/Dockstore.cwl @@ -19,7 +19,7 @@ dct:creator: requirements: - class: DockerRequirement - dockerPull: "quay.io/wtsicgp/dockstore-cgpwgs:1.0.6" + dockerPull: "quay.io/wtsicgp/dockstore-cgpwgs:1.0.7" hints: - class: ResourceRequirement diff --git a/build/opt-build.sh b/build/opt-build.sh index 22dc0de..adf79a5 100644 --- a/build/opt-build.sh +++ b/build/opt-build.sh @@ -23,7 +23,7 @@ SRC_ASCAT="https://raw.githubusercontent.com/Crick-CancerGenomics/ascat/6d40e69a VER_GRASS="v2.1.0" ### BRASS -VER_BRASS="v5.3.3" +VER_BRASS="v5.4.0" SOURCE_BLAT="http://users.soe.ucsc.edu/~kent/src/blatSrc35.zip" SRC_FASTA36="https://github.com/wrpearson/fasta36/archive/v36.3.8d_13Apr16.tar.gz"