diff --git a/scripts/analysisWGS.sh b/scripts/analysisWGS.sh index f926675..4201d30 100755 --- a/scripts/analysisWGS.sh +++ b/scripts/analysisWGS.sh @@ -341,7 +341,7 @@ do_parallel[CaVEMan]="caveman.pl \ -c $SNVFLAG \ -f $REF_BASE/caveman/flagging/flag.to.vcf.convert.ini \ -e $CAVESPLIT \ - -o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman + -o $OUTPUT_DIR/${PROTOCOL}_${NAME_MT}_vs_${NAME_WT}/caveman \ -k $NORM_CONTAM \ -no-flagging"