cBioPortal · Rima-Waleed · Aug 7, 2023 · Aug 14, 2023 · Aug 15, 2023 · Aug 15, 2023
diff --git a/public/ccle_broad_2023/ReadMe.rtf b/public/ccle_broad_2023/ReadMe.rtf
diff --git a/public/ccle_broad_2023/case_lists/cases_RNA_Seq_v2_mRNA.txt b/public/ccle_broad_2023/case_lists/cases_RNA_Seq_v2_mRNA.txt
diff --git a/public/ccle_broad_2023/case_lists/cases_all.txt b/public/ccle_broad_2023/case_lists/cases_all.txt
diff --git a/public/ccle_broad_2023/case_lists/cases_log2CNA.txt b/public/ccle_broad_2023/case_lists/cases_log2CNA.txt
diff --git a/public/ccle_broad_2023/case_lists/cases_sequenced.txt b/public/ccle_broad_2023/case_lists/cases_sequenced.txt
diff --git a/public/ccle_broad_2023/case_lists/cases_sv.txt b/public/ccle_broad_2023/case_lists/cases_sv.txt
diff --git a/public/ccle_broad_2023/data_RNA_Seq_v2_expression_median.txt b/public/ccle_broad_2023/data_RNA_Seq_v2_expression_median.txt
diff --git a/public/ccle_broad_2023/data_RNA_Seq_v2_mRNA_median_Zscores.txt b/public/ccle_broad_2023/data_RNA_Seq_v2_mRNA_median_Zscores.txt
diff --git a/public/ccle_broad_2023/data_clinical_patient.txt b/public/ccle_broad_2023/data_clinical_patient.txt
diff --git a/public/ccle_broad_2023/data_clinical_sample.txt b/public/ccle_broad_2023/data_clinical_sample.txt
diff --git a/public/ccle_broad_2023/data_cna_hg38.seg b/public/ccle_broad_2023/data_cna_hg38.seg
diff --git a/public/ccle_broad_2023/data_log2_cna.txt b/public/ccle_broad_2023/data_log2_cna.txt
diff --git a/public/ccle_broad_2023/data_mutations.txt b/public/ccle_broad_2023/data_mutations.txt
diff --git a/public/ccle_broad_2023/data_sv.txt b/public/ccle_broad_2023/data_sv.txt
diff --git a/public/ccle_broad_2023/meta_clinical_patient.txt b/public/ccle_broad_2023/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: ccle_broad_2023
+data_filename: data_clinical_patient.txt
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
diff --git a/public/ccle_broad_2023/meta_clinical_sample.txt b/public/ccle_broad_2023/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: ccle_broad_2023
+data_filename: data_clinical_sample.txt
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
diff --git a/public/ccle_broad_2023/meta_cna_hg38_seg.txt b/public/ccle_broad_2023/meta_cna_hg38_seg.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: ccle_broad_2023
+reference_genome_id: hg38
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals)
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+data_filename: data_cna_hg38.seg
diff --git a/public/ccle_broad_2023/meta_data_RNA_Seq_v2_expression_median.txt b/public/ccle_broad_2023/meta_data_RNA_Seq_v2_expression_median.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: ccle_broad_2023
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: CONTINUOUS
+stable_id: rna_seq_v2_mrna
+show_profile_in_analysis_tab: false
+profile_name: RNA expression 
+profile_description: Expression levels 
+data_filename: data_RNA_Seq_v2_expression_median.txt
diff --git a/public/ccle_broad_2023/meta_log2_cna.txt b/public/ccle_broad_2023/meta_log2_cna.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: ccle_broad_2023
+data_filename: data_log2_cna.txt
+stable_id: log2CNA
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: LOG2-VALUE
+show_profile_in_analysis_tab: false
+profile_name: Log2 copy-number values
+profile_description: Log2 copy-number values for each gene.
diff --git a/public/ccle_broad_2023/meta_mutations.txt b/public/ccle_broad_2023/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: ccle_broad_2023
+data_filename: data_mutations.txt
+stable_id: mutations
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+show_profile_in_analysis_tab: TRUE
+profile_name: Mutations
+profile_description: Mutation data from whole genome and whole exome sequencing for 2320 samples.
diff --git a/public/ccle_broad_2023/meta_rna_seq_v2_mrna_median_Zscores.txt b/public/ccle_broad_2023/meta_rna_seq_v2_mrna_median_Zscores.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: ccle_broad_2023
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_v2_mrna_median_Zscores
+show_profile_in_analysis_tab: true
+profile_name: RNA expression 
+profile_description: Expression levels 
+data_filename: data_RNA_Seq_v2_mRNA_median_Zscores.txt
diff --git a/public/ccle_broad_2023/meta_study.txt b/public/ccle_broad_2023/meta_study.txt
@@ -0,0 +1,7 @@
+cancer_study_identifier: ccle_broad_2023
+type_of_cancer: mixed
+name: Broad (ccle 2023) 
+description: Cancer Cell Line Encyclopedia (CCLE) study aiming to characterize a broad variety of human cancers using WGS and WES of 1,072 cell lines from various lineages and ethnicities. 
+pmid: 31068700
+reference_genome: hg38
+citation: Ghandi et al. Nature 2019
diff --git a/public/ccle_broad_2023/meta_sv.txt b/public/ccle_broad_2023/meta_sv.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: ccle_broad_2023
+data_filename: data_sv.txt
+stable_id: structural_variants
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+show_profile_in_analysis_tab: TRUE
+profile_name: Structural variants
+profile_description: Structural Variant Data