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Data Issue: Insertions show as Deletions #1899

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rmadupuri opened this issue Aug 23, 2023 · 0 comments
Open

Data Issue: Insertions show as Deletions #1899

rmadupuri opened this issue Aug 23, 2023 · 0 comments

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@rmadupuri
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A couple of insertions were showing up as deletions but reannotating the MAFs fixes these

select * from mutation_event
where VARIANT_TYPE = 'DEL' and TUMOR_SEQ_ALLELE != '-'
and LENGTH(TUMOR_SEQ_ALLELE) > LENGTH(REFERENCE_ALLELE);

see https://docs.google.com/spreadsheets/d/1Krb7t80nJ5fZcmUdPLGvmf4BBh4oL4FEnc42QA_Zw6M/edit#gid=30964619

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