diff --git a/PECGS-QUICviz/QUICviz.wdl b/PECGS-QUICviz/QUICviz.wdl index 414a942..a5e706d 100644 --- a/PECGS-QUICviz/QUICviz.wdl +++ b/PECGS-QUICviz/QUICviz.wdl @@ -5,7 +5,7 @@ workflow QUICviz { String sampleID Boolean isPECGS = true String tumorType - String quicvizDocker = "us-central1-docker.pkg.dev/tag-team-160914/gptag-dockers/cmi_quicviz:0.4.1" + String quicvizDocker = "us-central1-docker.pkg.dev/tag-team-160914/gptag-dockers/cmi_quicviz:0.4.2" File allelicCountsNormal File allelicCountsTumor File denoisedCopyRatiosNormal @@ -79,9 +79,9 @@ task QUICviz { --tumor_seg_oncotated ~{oncotatedCalledTumor} \ --output_dir outputs/ - mv outputs/chromosome_plots.pdf outputs/~{sampleID}_chromosome_plots.pdf - mv outputs/gene_level_calls.csv outputs/~{sampleID}_gene_level_calls.csv - mv outputs/All_chr.png outputs/~{sampleID}_All_chr.png + mv outputs/*chromosome_plots.pdf outputs/~{sampleID}_chromosome_plots.pdf + mv outputs/*gene_level_calls.csv outputs/~{sampleID}_gene_level_calls.csv + mv outputs/*_all_chr.png outputs/~{sampleID}_All_chr.png >>> output {