diff --git a/AlignmentBasedCNVEvaluation/AlignmentBasedCNVEvaluation.wdl b/AlignmentBasedCNVEvaluation/AlignmentBasedCNVEvaluation.wdl index e30e7c8..d355c2b 100644 --- a/AlignmentBasedCNVEvaluation/AlignmentBasedCNVEvaluation.wdl +++ b/AlignmentBasedCNVEvaluation/AlignmentBasedCNVEvaluation.wdl @@ -111,6 +111,12 @@ version 1.0 command <<< set -e + # Import the resource monitor script + export TMPDIR=/tmp + wget -O monitor_script.sh https://raw.githubusercontent.com/klarman-cell-observatory/cumulus/master/docker/monitor_script.sh + chmod a+rx monitor_script.sh + ./monitor_script.sh > monitoring.log & + # Extract blast database from tar files mkdir -p /lastdb/reference_database mkdir -p /lastdb/t2t_database @@ -134,7 +140,7 @@ version 1.0 bootDiskSizeGb: 12 cpu: 16 memory: "128 GB" - disks: "local-disk 500 HDD" + disks: "local-disk 1000 HDD" preemptible: 0 maxRetries: 0 }