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what does they mean in the params.txt #1

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huqingtao2018 opened this issue Jan 30, 2019 · 2 comments
Open

what does they mean in the params.txt #1

huqingtao2018 opened this issue Jan 30, 2019 · 2 comments

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@huqingtao2018
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hi,
would you please tell me what does those parameters means in the params.txt?
crispra_downstream=50
crispra_upstream=400
crispri_downstream=50
crispri_upstream=300

Thank you~

@fheigwer
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hi there,
these are parameters that take action when purpose_exclusive=1 and purpose=CRISPRa or purpose=CRISPRi and govern in what range around the transcription start sites of the genes' transcripts sgRNA targets are searched.

Best,
Florian

@huqingtao2018
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Thank you very much for answering so quickly.
Best,
Qingtao Hu

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