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Support circular sequences #70
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As discussed in #113, we won't support circular sequences as a schema property. Instead, we will add support for callers to request that a sequence is interpreted as circular.. Possible features:
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This issue was closed because it has been stalled for 7 days with no activity. |
This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days. |
Seqrepo does not currently provide special support for circular sequences. It should.
The easier implementation is with a boolean that assumes the origin at interbase position 0.
An alternative is to support arbitrary origin locations by storing the origin position. For linear sequences, the value is unset. All coordinate computations would need to be modified to circularly permute based on this origin.
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