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Implement Parser for ncbiTaxonomy Dataset #23

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alberskib opened this issue Jun 1, 2014 · 3 comments
Open

Implement Parser for ncbiTaxonomy Dataset #23

alberskib opened this issue Jun 1, 2014 · 3 comments
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@alberskib
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Implement parser and integrate it with code for storing data in DynamoDb

@alberskib
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Files format description: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump_readme.txt
Data files: ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz

Prior to https://github.com/bio4j/scala-model/blob/master/src/main/scala/bio4j/model/module/ncbiTaxonomy.scala ncbiTaxon have subrank but in linked files I do not see corresponding data
Similar situation with scientific name - founded in names.dmp

@alberskib
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@bio4j/dynamograph Bump

@laughedelic
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alberskib added a commit that referenced this issue Jul 22, 2014
alberskib added a commit that referenced this issue Jul 22, 2014
alberskib added a commit that referenced this issue Jul 22, 2014
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