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<!DOCTYPE html>
<html>
<head>
<meta charset='utf-8' />
<meta http-equiv="X-UA-Compatible" content="chrome=1" />
<meta name="description" content="Bio2RDF : Linked Life Science Data" />
<link rel="stylesheet" type="text/css" media="screen" href="stylesheets/stylesheet.css">
<title>Bio2RDF</title>
</head>
<body>
<!-- HEADER -->
<div id="header_wrap" class="outer">
<header class="inner">
<a id="forkme_banner" href="https://github.com/bio2rdf">View on GitHub</a>
<h1 id="project_title">Bio2RDF</h1>
<h2 id="project_tagline">Linked Life Science Data</h2>
</header>
</div>
<!-- MAIN CONTENT -->
<div id="main_content_wrap" class="outer">
<section id="main_content" class="inner">
<h1>
<a name="bio2rdf" class="anchor" href="#bio2rdf"><span class="octicon octicon-link"></span></a>Bio2RDF</h1>
<p>Bio2RDF provides access to biological, chemical, and other scientific databases using semantic web technologies to provide common references for linked life science data.</p>
<h2>
<a name="rdf-conversion-scripts" class="anchor" href="#rdf-conversion-scripts"><span class="octicon octicon-link"></span></a>RDF conversion scripts</h2>
<p>The Bio2RDF community has created <a href="https://github.com/bio2rdf/bio2rdf-scripts">scripts to convert scientific databases to RDF</a>. These conversions scripts utilise the common Bio2RDF URIs to link between data items within and across databases.</p>
<h2>
<a name="vocabulary-mappings" class="anchor" href="#vocabulary-mappings"><span class="octicon octicon-link"></span></a>Vocabulary mappings</h2>
<p>The Bio2RDF community has created <a href="https://github.com/bio2rdf/bio2rdf-mappings">vocabularies</a> to standardise properties that are used in the RDF conversions process.</p>
<h2>
<a name="sparql-endpoints" class="anchor" href="#sparql-endpoints"><span class="octicon octicon-link"></span></a>SPARQL endpoints</h2>
<p>The Bio2RDF community provides a number of publicly available copies of the databases that are generated by the RDF conversion scripts. These are available as <a href="http://download.bio2rdf.org/current/release.html">SPARQL endpoints</a> using the Virtuoso Open Source database.</p>
<h2>
<a name="web-application" class="anchor" href="#web-application"><span class="octicon octicon-link"></span></a>Web application</h2>
<p>The Bio2RDF.org website is powered by the <a href="https://github.com/ansell/queryall">QueryAll Linked Data Server</a>. The configuration and template files used by Bio2RDF are available <a href="https://github.com/bio2rdf/bio2rdf-webapp">here</a>.</p>
<h2>
<a name="authors-and-contributors" class="anchor" href="#authors-and-contributors"><span class="octicon octicon-link"></span></a>Authors and Contributors</h2>
<p>Bio2RDF was created by François Belleau (<a href="https://github.com/fbelleau" class="user-mention">@fbelleau</a>) and Marc Alexandre Nolin. The scripts and databases are maintained by Michel Dumontier (<a href="https://github.com/micheldumontier" class="user-mention">@micheldumontier</a>), Alison Callahan (<a href="https://github.com/alisoncallahan" class="user-mention">@alisoncallahan</a>), Jose Cruz-Toledo (<a href="https://github.com/jctoledo" class="user-mention">@jctoledo</a>) and Dana Klassen (<a href="https://github.com/dklassen" class="user-mention">@dklassen</a>). Peter Ansell (<a href="https://github.com/ansell" class="user-mention">@ansell</a>) maintains the Web Application. </p>
<h3>
<a name="support-or-contact" class="anchor" href="#support-or-contact"><span class="octicon octicon-link"></span></a>Support or Contact</h3>
<p>The <a href="https://groups.google.com/group/bio2rdf">Bio2RDF Mailing List</a> provides an easy way to discuss issues with the Bio2RDF community.</p>
</section>
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