project.xml.local

<project type="bio">
  <property name="target.model" value="genomic"/>
  <property name="common.os.prefix" value="common"/>
  <property name="intermine.properties.file" value="alliancemine.properties"/>
  <property name="default.intermine.properties.file" location="../default.intermine.integrate.properties"/>
  <sources>

    <source name="alliance-genes" type="alliance-genes">
      <property name="src.data.dir" location="/Users/kkarra/Dev/agr_java_software/agr_intermine_data_extractor/data/genes"/>
    </source>

    <source name="alliance-genes-crossrefs" type="alliance-genes-crossrefs">
      <property name="src.data.dir" location="/Users/kkarra/Dev/agr_java_software/agr_intermine_data_extractor/data/fms"/>
      <property name="src.data.dir.includes" value="GENECROSSREFERENCE_COMBINED.tsv"/>
    </source>

    <source name="do" type="do">
      <property name="src.data.file" location="/System/Volumes/Data/Users/data/intermine/ontology/doid.obo"/>
    </source>

    <source name="go" type="go">
      <property name="src.data.file" location="/System/Volumes/Data/Users/data/intermine/ontology/go-basic.obo"/>
    </source>

    <source name="update-publications" type="update-publications">
      <property name="src.data.file" location="publications.xml"/>
    </source>

    <source name="entrez-organism" type="entrez-organism">
      <property name="src.data.file" location="organisms.xml"/>
    </source>

    <source name="so" type="so">
      <property name="src.data.file" location="so.obo"/>
    </source>


  </sources>

  <post-processing>
    <post-process name="create-references"/>
    <post-process name="do-sources"/>
    <post-process name="create-intergenic-region-features"/>
    <post-process name="create-location-overlap-index"/>
    <post-process name="create-overlap-view"/>
    <post-process name="create-gene-flanking-features"/>
    <post-process name="populate-child-features"/>
    <post-process name="transfer-sequences"/>
    <post-process name="create-search-index"/>
    <post-process name="create-attribute-indexes"/>
    <post-process name="summarise-objectstore"/>
    <post-process name="create-autocomplete-index"/>
  </post-processing>

</project>