Ready for 2.7.6a

alexdobin · Sep 19, 2020 · fdfae27 · fdfae27
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,3 +1,12 @@
+STAR 2.7.6a --- 2020/09/19
+==========================
+**Major new feature:**
+Output multimapping chimeric alignments in BAM format using
+```--chimMultimapNmax N>1 --chimOutType WithinBAM --outSAMtype BAM Unsorted [and/or] SortedByCoordinate```
+Many thanks to Sebastian @suhrig who implemented this feature!
+More detailed description from Sebastian in PR #802.
+
+**Minor features and bug fixes:**
 * Issue #1008: fixed the problem with Unmapped.out.mate? output for --soloType CB_samTagOut output.
 * PR # 1012: fixed the bug with --soloCellFiltering TopCells option.
 * Issue #786: fixed the bug causing the *Different SJ motifs problem* for overlapping mates.

diff --git a/README.md b/README.md
@@ -35,9 +35,9 @@ Download the latest [release from](https://github.com/alexdobin/STAR/releases) a
 
 ```bash
 # Get latest STAR source from releases
-wget https://github.com/alexdobin/STAR/archive/2.7.5c.tar.gz
-tar -xzf 2.7.5c.tar.gz
-cd STAR-2.7.5c
+wget https://github.com/alexdobin/STAR/archive/2.7.6a.tar.gz
+tar -xzf 2.7.6a.tar.gz
+cd STAR-2.7.6a
 
 # Alternatively, get STAR source using git
 git clone https://github.com/alexdobin/STAR.git

diff --git a/RELEASEnotes.md b/RELEASEnotes.md
@@ -1,3 +1,11 @@
+STAR 2.7.6a --- 2020/09/19
+==========================
+**Major new feature:**
+Output multimapping chimeric alignments in BAM format using
+```--chimMultimapNmax N>1 --chimOutType WithinBAM --outSAMtype BAM Unsorted [and/or] SortedByCoordinate```
+Many thanks to Sebastian @suhrig who implemented this feature!
+More detailed description from Sebastian in PR #802.
+
 STAR 2.7.5a 2020/06/16
 ======================
 **Major new features:  

diff --git a/bin/Linux_x86_64/STAR b/bin/Linux_x86_64/STAR
diff --git a/bin/Linux_x86_64/STARlong b/bin/Linux_x86_64/STARlong
diff --git a/bin/Linux_x86_64_static/STAR b/bin/Linux_x86_64_static/STAR
diff --git a/bin/Linux_x86_64_static/STARlong b/bin/Linux_x86_64_static/STARlong
diff --git a/doc/STARmanual.pdf b/doc/STARmanual.pdf
diff --git a/extras/doc-latex/STARmanual.tex b/extras/doc-latex/STARmanual.tex
@@ -34,7 +34,7 @@
 
 \newcommand{\sechyperref}[1]{\hyperref[#1]{Section \ref{#1}. \nameref{#1}}}
 
-\title{STAR manual 2.7.5c}
+\title{STAR manual 2.7.6a}
 \author{Alexander Dobin\\
 dobin@cshl.edu}
 \maketitle

diff --git a/extras/docker/Dockerfile b/extras/docker/Dockerfile
@@ -2,7 +2,7 @@ FROM debian:stable-slim
 
 MAINTAINER dobin@cshl.edu
 
-ARG STAR_VERSION=2.7.5c
+ARG STAR_VERSION=2.7.6a
 
 ENV PACKAGES gcc g++ make wget zlib1g-dev unzip
 

diff --git a/source/VERSION b/source/VERSION
@@ -1 +1 @@
-#define STAR_VERSION "2.7.6a_testing1"
+#define STAR_VERSION "2.7.6a"