Clean clone of hdf5-rust does not build out of the box

[CiaranWelsh]

Hey there,

Just to let you know that this repository currently does not build from a clean checkout.

(base) ciaran@Ciarans-MacBook-Pro luna-for-prune % git clone https://github.com/aldanor/hdf5-rust.git --recurse-submodules
Cloning into 'hdf5-rust'...
remote: Enumerating objects: 8801, done.
remote: Counting objects: 100% (1606/1606), done.
remote: Compressing objects: 100% (424/424), done.
remote: Total 8801 (delta 1249), reused 1355 (delta 1133), pack-reused 7195
Receiving objects: 100% (8801/8801), 1.82 MiB | 1.43 MiB/s, done.
Resolving deltas: 100% (6023/6023), done.
Submodule 'hdf5' (https://github.com/HDFGroup/hdf5.git) registered for path 'hdf5-src/ext/hdf5'
Cloning into '/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-src/ext/hdf5'...
remote: Enumerating objects: 506188, done.
remote: Counting objects: 100% (6108/6108), done.
remote: Compressing objects: 100% (1625/1625), done.
remote: Total 506188 (delta 5900), reused 4603 (delta 4482), pack-reused 500080
Receiving objects: 100% (506188/506188), 388.01 MiB | 948.00 KiB/s, done.
Resolving deltas: 100% (436280/436280), done.
Submodule path 'hdf5-src/ext/hdf5': checked out 'db30c2da68ece4a155e9e50c28ec16d6057509b2'

(base) ciaran@Ciarans-MacBook-Pro hdf5-rust % cargo build --release
Updating crates.io index
Compiling autocfg v1.1.0
Compiling memchr v2.7.1
Compiling proc-macro2 v1.0.78
Compiling version_check v0.9.4
Compiling regex-syntax v0.8.2
Compiling cfg-if v1.0.0
Compiling unicode-ident v1.0.12
Compiling libc v0.2.153
Compiling parking_lot_core v0.9.9
Compiling rawpointer v0.2.1
Compiling hdf5-types v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-types)
Compiling libloading v0.8.1
Compiling paste v1.0.14
Compiling smallvec v1.13.1
Compiling scopeguard v1.2.0
Compiling ascii v1.1.0
Compiling hdf5 v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5)
Compiling proc-macro-error-attr v1.0.4
Compiling aho-corasick v1.1.2
Compiling num-traits v0.2.18
Compiling proc-macro-error v1.0.4
Compiling matrixmultiply v0.3.8
Compiling lock_api v0.4.11
Compiling bitflags v2.4.2
Compiling lazy_static v1.4.0
Compiling regex-automata v0.4.5
Compiling num-integer v0.1.46
Compiling num-complex v0.4.5
Compiling quote v1.0.35
Compiling syn v2.0.51
Compiling regex v1.10.3
Compiling parking_lot v0.12.1
Compiling ndarray v0.15.6
Compiling hdf5-sys v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-sys)
Compiling hdf5-derive v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-derive)
error: failed to run custom build command for hdf5-sys v0.8.1 (/Users/Ciaran/luna-for-prune/hdf5-rust/hdf5-sys)

Caused by:
process didn't exit successfully: /Users/Ciaran/luna-for-prune/hdf5-rust/target/release/build/hdf5-sys-98b7849df7e55dfb/build-script-build (exit status: 101)
--- stdout
Attempting to find HDF5 via Homebrew (any version)...

--- stderr
thread 'main' panicked at hdf5-sys/build.rs:595:13:
Unable to locate HDF5 root directory and/or headers.
note: run with RUST_BACKTRACE=1 environment variable to display a backtrace
warning: build failed, waiting for other jobs to finish...
(base) ciaran@Ciarans-MacBook-Pro hdf5-rust %

Likely you need to update the path pointed to by your submodule

[mulimoen]

The default build assumes hdf5 (the C library) is already installed on the machine. If you wish to build using the included source you will need git submodule update --init followed by cargo build --workspace --exclude hdf5-derive --features static