.gitignore

.DS_Store
a.out
*~
bin/*
DTarray_pro.xcodeproj/*
obj/*
lib/*
helpFile.pdf
include/config.hpp
doc/doxygen/html/*
*.html
.idea
build/*

#stuff from test folder
test/bin/*
test/data/*

## Core latex/pdflatex auxiliary files:
*.aux
*.lof
*.log
*.lot
*.fls
*.out
*.toc
*.fmt
*.fot
*.cb
*.cb2
.*.lb

## Intermediate documents:
*.dvi
*.xdv
*-converted-to.*
# these rules might exclude image files for figures etc.
# *.ps
# *.eps
# *.pdf

## Generated if empty string is given at "Please type another file name for output:"
*.pdf
#!installation_step_by_step.pdf

## Bibliography auxiliary files (bibtex/biblatex/biber):
*.bbl
*.bcf
*.blg
*-blx.aux
*-blx.bib
*.run.xml

## Build tool auxiliary files:
*.fdb_latexmk
*.synctex
*.synctex(busy)
*.synctex.gz
*.synctex.gz(busy)
*.pdfsync

test/.spyproject/*
test/data/DTarray_long.tsv
test/data/DTarray_pro.tsv
test/data/atomCountTable.txt
test/data/dtarray_pro_flist.txt
test/data/interaction_file.txt
test/data/loc_summary.tsv
test/data/loc_summary_long.tsv
test/data/peptideList.tsv
test/data/peptideList_long.tsv
test/data/prey_file.txt
test/temp/*
test/log/*

#pbs e and o files
*pbs.e[0-9]*
*pbs.o[0-9]*
.Rproj.user

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/
*.Rproj

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
rsconnect/