add logo

.gitignore

@@ -1,6 +1,6 @@
 .Rproj.user
 .Rhistory
-.Rdata
+*.Rdata
 .httr-oauth
 .DS_Store
 src/htslib-1.18

README.Rmd

@@ -13,10 +13,11 @@ knitr::opts_chunk$set(
 )
 ```
 
-# vcfppR
+# vcfppR: rapid manipulation of the VCF/BCF files
 
 <!-- badges: start -->
-[R-CMD-check](https://github.com/Zilong-Li/vcfppR/actions/workflows/check-release.yaml/badge.svg)
+![R-CMD-check](https://github.com/Zilong-Li/vcfppR/actions/workflows/check-release.yaml/badge.svg)
+<a href="https://github.com/Zilong-Li/vcfppR"><img src="https://raw.githubusercontent.com/Zilong-Li/random/main/vcfppR.png" height="200" align="right" /></a> 
 <!-- badges: end -->
 
 The vcfppR package implements various useful functions for manipulating the VCF/BCF files in R using the C++ API of vcfpp.

README.md

@@ -1,11 +1,12 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# vcfppR
+# vcfppR: rapid manipulation of the VCF/BCF files
 
 <!-- badges: start -->
 
-[R-CMD-check](https://github.com/Zilong-Li/vcfppR/actions/workflows/check-release.yaml/badge.svg)
+![R-CMD-check](https://github.com/Zilong-Li/vcfppR/actions/workflows/check-release.yaml/badge.svg)
+<a href="https://github.com/Zilong-Li/vcfppR"><img src="https://raw.githubusercontent.com/Zilong-Li/random/main/vcfppR.png" height="200" align="right" /></a>
 <!-- badges: end -->
 
 The vcfppR package implements various useful functions for manipulating

tests/testthat/test-random.R

@@ -0,0 +1,27 @@
+q()
+
+load("vcfppR.RData")
+library(hexSticker)
+library(ggplot2)
+
+library(showtext)
+## Loading Google fonts (http://www.google.com/fonts)
+font_add_google("Gochi Hand", "gochi")
+## Automatically use showtext to render text for future devices
+showtext_auto()
+
+names(o)
+
+d <- data.frame(x = unlist(o), 
+                counts = rep(names(o),times = sapply(o,length)))
+
+p <- ggplot(d, aes(x = counts, y = x)) + xlab("") + ylab("") +
+  geom_boxplot()
+p <- p + theme_classic()
+p <- p + theme_transparent()
+
+sticker(p, package="vcfppR", 
+        p_size=20, s_x=0.9, s_y=.7, s_width=1.3, s_height=1.1,
+        filename="vcfppR.png", h_fill = "red", h_color = "orange")
+
+dev.off()